EuRBPDB

Description

Ensembl ID: MGP_NODShiLtJ_G0026580 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 34011 bases
Position: chr2:175711815-175745825
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0058408	RRM_1	PF00076.22	1.2e-41	1	2
MGP_NODShiLtJ_P0058408	RRM_1	PF00076.22	1.2e-41	2	2
MGP_NODShiLtJ_P0058409	RRM_1	PF00076.22	1.7e-41	1	2
MGP_NODShiLtJ_P0058409	RRM_1	PF00076.22	1.7e-41	2	2
MGP_NODShiLtJ_P0058410	RRM_1	PF00076.22	1.7e-41	1	2
MGP_NODShiLtJ_P0058410	RRM_1	PF00076.22	1.7e-41	2	2
MGP_NODShiLtJ_P0058414	RRM_1	PF00076.22	2.2e-22	1	1
MGP_NODShiLtJ_P0058415	RRM_1	PF00076.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0058419	-	754	-	MGP_NODShiLtJ_P0058419	156 (aa)	-	-
MGP_NODShiLtJ_T0058418	-	1454	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058411	-	2744	-	MGP_NODShiLtJ_P0058411	415 (aa)	-	-
MGP_NODShiLtJ_T0058410	-	2711	-	MGP_NODShiLtJ_P0058410	524 (aa)	-	-
MGP_NODShiLtJ_T0058413	-	2120	-	MGP_NODShiLtJ_P0058413	40 (aa)	-	-
MGP_NODShiLtJ_T0058412	-	2127	-	MGP_NODShiLtJ_P0058412	47 (aa)	-	-
MGP_NODShiLtJ_T0058415	-	1090	-	MGP_NODShiLtJ_P0058415	273 (aa)	-	-
MGP_NODShiLtJ_T0058414	-	931	-	MGP_NODShiLtJ_P0058414	310 (aa)	-	-
MGP_NODShiLtJ_T0058417	-	546	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058416	-	695	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058424	-	593	-	MGP_NODShiLtJ_P0058424	39 (aa)	-	-
MGP_NODShiLtJ_T0058425	-	710	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058426	-	585	-	MGP_NODShiLtJ_P0058426	62 (aa)	-	-
MGP_NODShiLtJ_T0058427	-	743	-	MGP_NODShiLtJ_P0058427	40 (aa)	-	-
MGP_NODShiLtJ_T0058420	-	497	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058421	-	714	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058422	-	685	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058423	-	707	-	MGP_NODShiLtJ_P0058423	40 (aa)	-	-
MGP_NODShiLtJ_T0058428	-	667	-	MGP_NODShiLtJ_P0058428	38 (aa)	-	-
MGP_NODShiLtJ_T0058429	-	672	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058408	-	2810	XM_006498832	MGP_NODShiLtJ_P0058408	530 (aa)	XP_006498895	Q8VH51
MGP_NODShiLtJ_T0058409	-	2580	-	MGP_NODShiLtJ_P0058409	524 (aa)	-	-
MGP_NODShiLtJ_T0058432	-	715	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058431	-	1008	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058430	-	699	-	MGP_NODShiLtJ_P0058430	40 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0026580	Rbm39	52	34.483	MGP_NODShiLtJ_G0017353	Dazap1	94	34.483