EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0026654 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 31960 bases
Position: chr2:184279059-184311018
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0058783	PABP	PF00658.18	1.8e-23	1	1
MGP_NODShiLtJ_P0058783	RRM_5	PF13893.6	3.2e-17	1	3
MGP_NODShiLtJ_P0058783	RRM_5	PF13893.6	3.2e-17	2	3
MGP_NODShiLtJ_P0058783	RRM_5	PF13893.6	3.2e-17	3	3
MGP_NODShiLtJ_P0058783	RRM_1	PF00076.22	3.5e-90	1	4
MGP_NODShiLtJ_P0058783	RRM_1	PF00076.22	3.5e-90	2	4
MGP_NODShiLtJ_P0058783	RRM_1	PF00076.22	3.5e-90	3	4
MGP_NODShiLtJ_P0058783	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0058783	-	2354	XM_006499825	MGP_NODShiLtJ_P0058783	607 (aa)	XP_006499888	A2A5N3
MGP_NODShiLtJ_T0058785	-	438	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058784	-	617	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058787	-	328	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0058786	-	750	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0026654's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0026654's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0026654	Pabpc1l	63	38.889	MGP_NODShiLtJ_G0034273	Elavl3	59	30.488
MGP_NODShiLtJ_G0026654	Pabpc1l	56	30.864	MGP_NODShiLtJ_G0020467	Hnrnpa0	50	31.613
MGP_NODShiLtJ_G0026654	Pabpc1l	60	35.870	MGP_NODShiLtJ_G0017421	Celf5	63	35.870
MGP_NODShiLtJ_G0026654	Pabpc1l	64	34.940	MGP_NODShiLtJ_G0028254	Elavl2	92	34.940
MGP_NODShiLtJ_G0026654	Pabpc1l	62	33.735	MGP_NODShiLtJ_G0028383	Elavl4	89	33.735
MGP_NODShiLtJ_G0026654	Pabpc1l	99	56.063	MGP_NODShiLtJ_G0021633	Pabpc1	98	56.063
MGP_NODShiLtJ_G0026654	Pabpc1l	53	39.759	MGP_NODShiLtJ_G0017347	Cirbp	91	39.759
MGP_NODShiLtJ_G0026654	Pabpc1l	60	35.484	MGP_NODShiLtJ_G0029800	Rbm19	72	36.066
MGP_NODShiLtJ_G0026654	Pabpc1l	64	57.022	MGP_NODShiLtJ_G0035822	Pabpc5	96	56.944
MGP_NODShiLtJ_G0026654	Pabpc1l	97	79.279	MGP_NODShiLtJ_G0026856	-	95	79.279
MGP_NODShiLtJ_G0026654	Pabpc1l	59	30.818	MGP_NODShiLtJ_G0035199	Rbms3	77	30.818
MGP_NODShiLtJ_G0026654	Pabpc1l	53	34.884	MGP_NODShiLtJ_G0025170	Celf2	57	34.884
MGP_NODShiLtJ_G0026654	Pabpc1l	57	34.118	MGP_NODShiLtJ_G0027371	Celf3	67	32.857
MGP_NODShiLtJ_G0026654	Pabpc1l	99	56.938	MGP_NODShiLtJ_G0024199	Pabpc2	98	56.938
MGP_NODShiLtJ_G0026654	Pabpc1l	99	56.714	MGP_NODShiLtJ_G0022964	Pabpc6	97	56.872
MGP_NODShiLtJ_G0026654	Pabpc1l	59	60.736	MGP_NODShiLtJ_G0027002	Pabpc4l	95	60.736
MGP_NODShiLtJ_G0026654	Pabpc1l	59	38.095	MGP_NODShiLtJ_G0030780	Tia1	87	38.095
MGP_NODShiLtJ_G0026654	Pabpc1l	98	75.728	MGP_NODShiLtJ_G0028543	Pabpc4	100	79.710