EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0026747 (Gene tree)
Gene ID: -
Gene Symbol: Sall4
Alias: 5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20
Full Name: sal-like 4 (Drosophila)
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 32987 bases
Position: chr2:189584419-189617405
Accession: 2139360
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0059179	zf-C2H2	PF00096.26	1.4e-29	1	6
MGP_NODShiLtJ_P0059179	zf-C2H2	PF00096.26	1.4e-29	2	6
MGP_NODShiLtJ_P0059179	zf-C2H2	PF00096.26	1.4e-29	3	6
MGP_NODShiLtJ_P0059179	zf-C2H2	PF00096.26	1.4e-29	4	6
MGP_NODShiLtJ_P0059179	zf-C2H2	PF00096.26	1.4e-29	5	6
MGP_NODShiLtJ_P0059179	zf-C2H2	PF00096.26	1.4e-29	6	6
MGP_NODShiLtJ_P0059181	zf-C2H2	PF00096.26	2e-13	1	2
MGP_NODShiLtJ_P0059181	zf-C2H2	PF00096.26	2e-13	2	2
MGP_NODShiLtJ_P0059180	zf-C2H2	PF00096.26	3.2e-11	1	2
MGP_NODShiLtJ_P0059180	zf-C2H2	PF00096.26	3.2e-11	2	2
MGP_NODShiLtJ_P0059178	zf-C2H2	PF00096.26	3.3e-08	1	2
MGP_NODShiLtJ_P0059178	zf-C2H2	PF00096.26	3.3e-08	2	2
MGP_NODShiLtJ_P0059179	zf-met	PF12874.7	2.3e-11	1	1
MGP_NODShiLtJ_P0059181	zf-met	PF12874.7	1.4e-09	1	2
MGP_NODShiLtJ_P0059181	zf-met	PF12874.7	1.4e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0059184	-	328	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0059180	-	2530	-	MGP_NODShiLtJ_P0059180	278 (aa)	-	-
MGP_NODShiLtJ_T0059178	-	3737	XM_006500486	MGP_NODShiLtJ_P0059178	623 (aa)	XP_006500549	Q8BX22
MGP_NODShiLtJ_T0059182	-	773	-	MGP_NODShiLtJ_P0059182	215 (aa)	-	-
MGP_NODShiLtJ_T0059183	-	423	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0059179	-	5069	-	MGP_NODShiLtJ_P0059179	1067 (aa)	-	-
MGP_NODShiLtJ_T0059181	-	393	-	MGP_NODShiLtJ_P0059181	131 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0026747's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0026747's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0026747	Sall4	100	64.706	MGP_NODShiLtJ_G0033729	Sall1	95	64.706
MGP_NODShiLtJ_G0026747	Sall4	98	84.507	MGP_NODShiLtJ_G0024429	Sall3	66	65.385
MGP_NODShiLtJ_G0026747	Sall4	73	53.333	MGP_NODShiLtJ_G0024432	Zfp236	81	53.333