EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0027002 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 7888 bases
Position: chr3:51380504-51388391
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0060382	RRM_5	PF13893.6	1.6e-13	1	3
MGP_NODShiLtJ_P0060382	RRM_5	PF13893.6	1.6e-13	2	3
MGP_NODShiLtJ_P0060382	RRM_5	PF13893.6	1.6e-13	3	3
MGP_NODShiLtJ_P0060383	RRM_5	PF13893.6	1.6e-13	1	3
MGP_NODShiLtJ_P0060383	RRM_5	PF13893.6	1.6e-13	2	3
MGP_NODShiLtJ_P0060383	RRM_5	PF13893.6	1.6e-13	3	3
MGP_NODShiLtJ_P0060382	RRM_1	PF00076.22	4.7e-83	1	4
MGP_NODShiLtJ_P0060382	RRM_1	PF00076.22	4.7e-83	2	4
MGP_NODShiLtJ_P0060382	RRM_1	PF00076.22	4.7e-83	3	4
MGP_NODShiLtJ_P0060382	RRM_1	PF00076.22	4.7e-83	4	4
MGP_NODShiLtJ_P0060383	RRM_1	PF00076.22	4.7e-83	1	4
MGP_NODShiLtJ_P0060383	RRM_1	PF00076.22	4.7e-83	2	4
MGP_NODShiLtJ_P0060383	RRM_1	PF00076.22	4.7e-83	3	4
MGP_NODShiLtJ_P0060383	RRM_1	PF00076.22	4.7e-83	4	4
MGP_NODShiLtJ_P0060384	RRM_1	PF00076.22	1.8e-40	1	2
MGP_NODShiLtJ_P0060384	RRM_1	PF00076.22	1.8e-40	2	2
MGP_NODShiLtJ_P0060385	RRM_1	PF00076.22	1.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0060384	-	724	-	MGP_NODShiLtJ_P0060384	172 (aa)	-	-
MGP_NODShiLtJ_T0060385	-	468	-	MGP_NODShiLtJ_P0060385	50 (aa)	-	-
MGP_NODShiLtJ_T0060382	-	5032	XM_006500774	MGP_NODShiLtJ_P0060382	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_NODShiLtJ_T0060383	-	4998	-	MGP_NODShiLtJ_P0060383	370 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0027002's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0027002's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0027002	Pabpc4l	98	64.497	MGP_NODShiLtJ_G0022964	Pabpc6	58	64.497
MGP_NODShiLtJ_G0027002	Pabpc4l	95	30.539	MGP_NODShiLtJ_G0030780	Tia1	95	30.000
MGP_NODShiLtJ_G0027002	Pabpc4l	96	30.065	MGP_NODShiLtJ_G0028383	Elavl4	70	35.484
MGP_NODShiLtJ_G0027002	Pabpc4l	89	31.875	MGP_NODShiLtJ_G0028672	Trnau1ap	88	34.211
MGP_NODShiLtJ_G0027002	Pabpc4l	96	36.145	MGP_NODShiLtJ_G0034273	Elavl3	90	36.145
MGP_NODShiLtJ_G0027002	Pabpc4l	52	31.461	MGP_NODShiLtJ_G0028754	Srsf10	50	32.500
MGP_NODShiLtJ_G0027002	Pabpc4l	98	70.552	MGP_NODShiLtJ_G0028543	Pabpc4	100	70.370
MGP_NODShiLtJ_G0027002	Pabpc4l	95	68.098	MGP_NODShiLtJ_G0024199	Pabpc2	61	64.167
MGP_NODShiLtJ_G0027002	Pabpc4l	65	34.211	MGP_NODShiLtJ_G0025961	Celf1	57	37.879
MGP_NODShiLtJ_G0027002	Pabpc4l	94	30.464	MGP_NODShiLtJ_G0033137	Elavl1	91	30.464
MGP_NODShiLtJ_G0027002	Pabpc4l	96	34.940	MGP_NODShiLtJ_G0028254	Elavl2	89	34.940
MGP_NODShiLtJ_G0027002	Pabpc4l	83	34.286	MGP_NODShiLtJ_G0035337	Rbm3	90	35.385
MGP_NODShiLtJ_G0027002	Pabpc4l	97	57.865	MGP_NODShiLtJ_G0035822	Pabpc5	96	57.967
MGP_NODShiLtJ_G0027002	Pabpc4l	95	60.736	MGP_NODShiLtJ_G0026654	Pabpc1l	59	60.736
MGP_NODShiLtJ_G0027002	Pabpc4l	97	69.277	MGP_NODShiLtJ_G0021633	Pabpc1	64	67.493
MGP_NODShiLtJ_G0027002	Pabpc4l	94	33.333	MGP_NODShiLtJ_G0032890	Tial1	99	31.452