EuRBPDB

Description

Ensembl ID: MGP_NODShiLtJ_G0027855 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 185237 bases
Position: chr4:5887680-6072916
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0064301	ResIII	PF04851.15	4.5e-06	1	1
MGP_NODShiLtJ_P0064302	ResIII	PF04851.15	4.5e-06	1	1
MGP_NODShiLtJ_P0064301	BRK	PF07533.16	4.7e-37	1	2
MGP_NODShiLtJ_P0064301	BRK	PF07533.16	4.7e-37	2	2
MGP_NODShiLtJ_P0064302	BRK	PF07533.16	4.7e-37	1	2
MGP_NODShiLtJ_P0064302	BRK	PF07533.16	4.7e-37	2	2
MGP_NODShiLtJ_P0064304	BRK	PF07533.16	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0064302	-	10216	-	MGP_NODShiLtJ_P0064302	2986 (aa)	-	-
MGP_NODShiLtJ_T0064303	-	458	-	MGP_NODShiLtJ_P0064303	19 (aa)	-	-
MGP_NODShiLtJ_T0064300	-	2381	-	MGP_NODShiLtJ_P0064300	631 (aa)	-	-
MGP_NODShiLtJ_T0064301	-	9445	-	MGP_NODShiLtJ_P0064301	2986 (aa)	-	-
MGP_NODShiLtJ_T0064306	-	741	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0064304	-	3463	-	MGP_NODShiLtJ_P0064304	941 (aa)	-	-
MGP_NODShiLtJ_T0064305	-	11046	-	MGP_NODShiLtJ_P0064305	2985 (aa)	-	-
MGP_NODShiLtJ_T0064299	-	4953	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0027855	Chd7	94	54.247	MGP_NODShiLtJ_G0033732	Chd9	83	69.649
MGP_NODShiLtJ_G0027855	Chd7	72	64.905	MGP_NODShiLtJ_G0026630	Chd6	84	72.837