EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0028143 (Gene tree)
Gene ID: -
Gene Symbol: Ptbp3
Alias: 5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1
Full Name: polypyrimidine tract binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 84594 bases
Position: chr4:65587636-65672229
Accession: 1923334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0065532	RRM_5	PF13893.6	1.1e-61	1	3
MGP_NODShiLtJ_P0065532	RRM_5	PF13893.6	1.1e-61	2	3
MGP_NODShiLtJ_P0065532	RRM_5	PF13893.6	1.1e-61	3	3
MGP_NODShiLtJ_P0065533	RRM_5	PF13893.6	1.2e-61	1	3
MGP_NODShiLtJ_P0065533	RRM_5	PF13893.6	1.2e-61	2	3
MGP_NODShiLtJ_P0065533	RRM_5	PF13893.6	1.2e-61	3	3
MGP_NODShiLtJ_P0065535	RRM_5	PF13893.6	1.3e-47	1	1
MGP_NODShiLtJ_P0065538	RRM_5	PF13893.6	7.1e-06	1	1
MGP_NODShiLtJ_P0065532	RRM_1	PF00076.22	2.1e-31	1	3
MGP_NODShiLtJ_P0065532	RRM_1	PF00076.22	2.1e-31	2	3
MGP_NODShiLtJ_P0065532	RRM_1	PF00076.22	2.1e-31	3	3
MGP_NODShiLtJ_P0065533	RRM_1	PF00076.22	2.2e-31	1	3
MGP_NODShiLtJ_P0065533	RRM_1	PF00076.22	2.2e-31	2	3
MGP_NODShiLtJ_P0065533	RRM_1	PF00076.22	2.2e-31	3	3
MGP_NODShiLtJ_P0065538	RRM_1	PF00076.22	2.8e-11	1	1
MGP_NODShiLtJ_P0065535	RRM_1	PF00076.22	3.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0065536	-	1286	-	MGP_NODShiLtJ_P0065536	45 (aa)	-	-
MGP_NODShiLtJ_T0065537	-	558	-	MGP_NODShiLtJ_P0065537	41 (aa)	-	-
MGP_NODShiLtJ_T0065534	-	669	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0065535	-	566	-	MGP_NODShiLtJ_P0065535	188 (aa)	-	-
MGP_NODShiLtJ_T0065532	-	3385	XM_006537851	MGP_NODShiLtJ_P0065532	551 (aa)	XP_006537914	Q8BHD7
MGP_NODShiLtJ_T0065533	-	1665	-	MGP_NODShiLtJ_P0065533	554 (aa)	-	-
MGP_NODShiLtJ_T0065538	-	550	-	MGP_NODShiLtJ_P0065538	146 (aa)	-	-
MGP_NODShiLtJ_T0065539	-	447	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0065540	-	606	-	MGP_NODShiLtJ_P0065540	104 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0028143's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0028143	Ptbp3	91	78.195	MGP_NODShiLtJ_G0027641	Ptbp2	99	69.835
MGP_NODShiLtJ_G0028143	Ptbp3	83	35.537	MGP_NODShiLtJ_G0031777	Hnrnpl	55	36.207