EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0028543 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 50058 bases
Position: chr4:137734581-137784638
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0067280	PABP	PF00658.18	2.7e-31	1	1
MGP_NODShiLtJ_P0067277	PABP	PF00658.18	2.8e-31	1	1
MGP_NODShiLtJ_P0067278	PABP	PF00658.18	3e-31	1	1
MGP_NODShiLtJ_P0067276	PABP	PF00658.18	3.2e-31	1	1
MGP_NODShiLtJ_P0067280	RRM_5	PF13893.6	6e-09	1	2
MGP_NODShiLtJ_P0067280	RRM_5	PF13893.6	6e-09	2	2
MGP_NODShiLtJ_P0067277	RRM_5	PF13893.6	6.8e-09	1	2
MGP_NODShiLtJ_P0067277	RRM_5	PF13893.6	6.8e-09	2	2
MGP_NODShiLtJ_P0067278	RRM_5	PF13893.6	7.6e-09	1	2
MGP_NODShiLtJ_P0067278	RRM_5	PF13893.6	7.6e-09	2	2
MGP_NODShiLtJ_P0067276	RRM_5	PF13893.6	8.7e-09	1	1
MGP_NODShiLtJ_P0067280	RRM_1	PF00076.22	3.9e-90	1	4
MGP_NODShiLtJ_P0067280	RRM_1	PF00076.22	3.9e-90	2	4
MGP_NODShiLtJ_P0067280	RRM_1	PF00076.22	3.9e-90	3	4
MGP_NODShiLtJ_P0067280	RRM_1	PF00076.22	3.9e-90	4	4
MGP_NODShiLtJ_P0067277	RRM_1	PF00076.22	4.5e-90	1	4
MGP_NODShiLtJ_P0067277	RRM_1	PF00076.22	4.5e-90	2	4
MGP_NODShiLtJ_P0067277	RRM_1	PF00076.22	4.5e-90	3	4
MGP_NODShiLtJ_P0067277	RRM_1	PF00076.22	4.5e-90	4	4
MGP_NODShiLtJ_P0067278	RRM_1	PF00076.22	5.1e-90	1	4
MGP_NODShiLtJ_P0067278	RRM_1	PF00076.22	5.1e-90	2	4
MGP_NODShiLtJ_P0067278	RRM_1	PF00076.22	5.1e-90	3	4
MGP_NODShiLtJ_P0067278	RRM_1	PF00076.22	5.1e-90	4	4
MGP_NODShiLtJ_P0067276	RRM_1	PF00076.22	5.8e-90	1	4
MGP_NODShiLtJ_P0067276	RRM_1	PF00076.22	5.8e-90	2	4
MGP_NODShiLtJ_P0067276	RRM_1	PF00076.22	5.8e-90	3	4
MGP_NODShiLtJ_P0067276	RRM_1	PF00076.22	5.8e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0067279	-	2709	-	MGP_NODShiLtJ_P0067279	138 (aa)	-	-
MGP_NODShiLtJ_T0067278	-	2870	-	MGP_NODShiLtJ_P0067278	635 (aa)	-	-
MGP_NODShiLtJ_T0067282	-	692	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0067283	-	1146	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0067280	-	2582	-	MGP_NODShiLtJ_P0067280	606 (aa)	-	-
MGP_NODShiLtJ_T0067281	-	7287	-	MGP_NODShiLtJ_P0067281	2320 (aa)	-	-
MGP_NODShiLtJ_T0067277	-	2951	-	MGP_NODShiLtJ_P0067277	622 (aa)	-	-
MGP_NODShiLtJ_T0067276	-	2968	-	MGP_NODShiLtJ_P0067276	651 (aa)	-	-
MGP_NODShiLtJ_T0067275	-	245	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0028543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0028543's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0028543	Pabpc4	50	32.394	MGP_NODShiLtJ_G0027371	Celf3	69	33.784
MGP_NODShiLtJ_G0028543	Pabpc4	50	33.803	MGP_NODShiLtJ_G0024036	Celf4	62	33.028
MGP_NODShiLtJ_G0028543	Pabpc4	94	31.061	MGP_NODShiLtJ_G0034273	Elavl3	92	33.735
MGP_NODShiLtJ_G0028543	Pabpc4	99	34.848	MGP_NODShiLtJ_G0033137	Elavl1	95	33.553
MGP_NODShiLtJ_G0028543	Pabpc4	100	34.167	MGP_NODShiLtJ_G0032890	Tial1	100	30.233
MGP_NODShiLtJ_G0028543	Pabpc4	50	37.113	MGP_NODShiLtJ_G0034700	Celf6	68	37.113
MGP_NODShiLtJ_G0028543	Pabpc4	100	39.394	MGP_NODShiLtJ_G0030780	Tia1	95	33.333
MGP_NODShiLtJ_G0028543	Pabpc4	100	94.928	MGP_NODShiLtJ_G0021633	Pabpc1	98	92.718
MGP_NODShiLtJ_G0028543	Pabpc4	99	32.576	MGP_NODShiLtJ_G0028254	Elavl2	89	34.940
MGP_NODShiLtJ_G0028543	Pabpc4	81	77.679	MGP_NODShiLtJ_G0026856	-	100	79.699
MGP_NODShiLtJ_G0028543	Pabpc4	99	32.576	MGP_NODShiLtJ_G0028383	Elavl4	88	30.921
MGP_NODShiLtJ_G0028543	Pabpc4	90	37.500	MGP_NODShiLtJ_G0035337	Rbm3	87	40.000
MGP_NODShiLtJ_G0028543	Pabpc4	100	87.681	MGP_NODShiLtJ_G0024199	Pabpc2	98	84.951
MGP_NODShiLtJ_G0028543	Pabpc4	50	38.710	MGP_NODShiLtJ_G0017421	Celf5	65	38.710
MGP_NODShiLtJ_G0028543	Pabpc4	57	36.709	MGP_NODShiLtJ_G0019327	Rbfox3	67	39.130
MGP_NODShiLtJ_G0028543	Pabpc4	100	68.841	MGP_NODShiLtJ_G0035822	Pabpc5	94	65.556
MGP_NODShiLtJ_G0028543	Pabpc4	100	70.370	MGP_NODShiLtJ_G0027002	Pabpc4l	98	70.552
MGP_NODShiLtJ_G0028543	Pabpc4	100	86.232	MGP_NODShiLtJ_G0022964	Pabpc6	99	83.495
MGP_NODShiLtJ_G0028543	Pabpc4	100	79.710	MGP_NODShiLtJ_G0026654	Pabpc1l	98	75.728
MGP_NODShiLtJ_G0028543	Pabpc4	51	34.722	MGP_NODShiLtJ_G0035535	Rbmx	77	37.662
MGP_NODShiLtJ_G0028543	Pabpc4	88	32.258	MGP_NODShiLtJ_G0025961	Celf1	70	38.636
MGP_NODShiLtJ_G0028543	Pabpc4	60	37.500	MGP_NODShiLtJ_G0025170	Celf2	59	37.500
MGP_NODShiLtJ_G0028543	Pabpc4	56	32.278	MGP_NODShiLtJ_G0020467	Hnrnpa0	50	33.113