EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0028933 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 17162 bases
Position: chr4:165774465-165791626
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0068931	RRM_1	PF00076.22	1.2e-26	1	2
MGP_NODShiLtJ_P0068931	RRM_1	PF00076.22	1.2e-26	2	2
MGP_NODShiLtJ_P0068925	RRM_1	PF00076.22	4.4e-26	1	2
MGP_NODShiLtJ_P0068925	RRM_1	PF00076.22	4.4e-26	2	2
MGP_NODShiLtJ_P0068906	RRM_1	PF00076.22	4.5e-26	1	2
MGP_NODShiLtJ_P0068906	RRM_1	PF00076.22	4.5e-26	2	2
MGP_NODShiLtJ_P0068928	RRM_1	PF00076.22	4.5e-26	1	2
MGP_NODShiLtJ_P0068928	RRM_1	PF00076.22	4.5e-26	2	2
MGP_NODShiLtJ_P0068908	RRM_1	PF00076.22	4.8e-26	1	2
MGP_NODShiLtJ_P0068908	RRM_1	PF00076.22	4.8e-26	2	2
MGP_NODShiLtJ_P0068929	RRM_1	PF00076.22	4.8e-26	1	2
MGP_NODShiLtJ_P0068929	RRM_1	PF00076.22	4.8e-26	2	2
MGP_NODShiLtJ_P0068909	RRM_1	PF00076.22	4.9e-26	1	2
MGP_NODShiLtJ_P0068909	RRM_1	PF00076.22	4.9e-26	2	2
MGP_NODShiLtJ_P0068930	RRM_1	PF00076.22	4.9e-26	1	2
MGP_NODShiLtJ_P0068930	RRM_1	PF00076.22	4.9e-26	2	2
MGP_NODShiLtJ_P0068907	RRM_1	PF00076.22	1.2e-25	1	2
MGP_NODShiLtJ_P0068907	RRM_1	PF00076.22	1.2e-25	2	2
MGP_NODShiLtJ_P0068933	RRM_1	PF00076.22	4e-15	1	1
MGP_NODShiLtJ_P0068934	RRM_1	PF00076.22	4.9e-11	1	1
MGP_NODShiLtJ_P0068926	RRM_1	PF00076.22	6.6e-09	1	1
MGP_NODShiLtJ_P0068927	RRM_1	PF00076.22	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0068922	-	1304	-	MGP_NODShiLtJ_P0068922	285 (aa)	-	-
MGP_NODShiLtJ_T0068923	-	684	-	MGP_NODShiLtJ_P0068923	137 (aa)	-	-
MGP_NODShiLtJ_T0068920	-	741	-	MGP_NODShiLtJ_P0068920	175 (aa)	-	-
MGP_NODShiLtJ_T0068921	-	781	-	MGP_NODShiLtJ_P0068921	140 (aa)	-	-
MGP_NODShiLtJ_T0068926	-	483	-	MGP_NODShiLtJ_P0068926	128 (aa)	-	-
MGP_NODShiLtJ_T0068927	-	748	-	MGP_NODShiLtJ_P0068927	84 (aa)	-	-
MGP_NODShiLtJ_T0068924	-	517	-	MGP_NODShiLtJ_P0068924	77 (aa)	-	-
MGP_NODShiLtJ_T0068925	-	1667	-	MGP_NODShiLtJ_P0068925	295 (aa)	-	-
MGP_NODShiLtJ_T0068906	-	6260	XM_011250237	MGP_NODShiLtJ_P0068906	298 (aa)	XP_011248539	Q921F2
MGP_NODShiLtJ_T0068907	-	7242	-	MGP_NODShiLtJ_P0068907	414 (aa)	-	-
MGP_NODShiLtJ_T0068928	-	1096	-	MGP_NODShiLtJ_P0068928	298 (aa)	-	-
MGP_NODShiLtJ_T0068929	-	1011	-	MGP_NODShiLtJ_P0068929	304 (aa)	-	-
MGP_NODShiLtJ_T0068931	-	709	-	MGP_NODShiLtJ_P0068931	199 (aa)	-	-
MGP_NODShiLtJ_T0068930	-	923	-	MGP_NODShiLtJ_P0068930	302 (aa)	-	-
MGP_NODShiLtJ_T0068919	-	1011	-	MGP_NODShiLtJ_P0068919	34 (aa)	-	-
MGP_NODShiLtJ_T0068918	-	814	-	MGP_NODShiLtJ_P0068918	19 (aa)	-	-
MGP_NODShiLtJ_T0068935	-	370	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0068934	-	740	-	MGP_NODShiLtJ_P0068934	149 (aa)	-	-
MGP_NODShiLtJ_T0068913	-	676	-	MGP_NODShiLtJ_P0068913	88 (aa)	-	-
MGP_NODShiLtJ_T0068912	-	529	-	MGP_NODShiLtJ_P0068912	98 (aa)	-	-
MGP_NODShiLtJ_T0068911	-	731	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0068910	-	1773	-	MGP_NODShiLtJ_P0068910	298 (aa)	-	-
MGP_NODShiLtJ_T0068917	-	2006	-	MGP_NODShiLtJ_P0068917	298 (aa)	-	-
MGP_NODShiLtJ_T0068916	-	358	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0068915	-	605	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0068914	-	908	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0068933	-	818	-	MGP_NODShiLtJ_P0068933	243 (aa)	-	-
MGP_NODShiLtJ_T0068932	-	1411	-	MGP_NODShiLtJ_P0068932	84 (aa)	-	-
MGP_NODShiLtJ_T0068908	-	6278	-	MGP_NODShiLtJ_P0068908	304 (aa)	-	-
MGP_NODShiLtJ_T0068909	-	6190	-	MGP_NODShiLtJ_P0068909	302 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0028933's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0028933	Tardbp	86	33.146	MGP_NODShiLtJ_G0018120	Hnrnpab	82	32.099
MGP_NODShiLtJ_G0028933	Tardbp	92	35.000	MGP_NODShiLtJ_G0035535	Rbmx	78	35.000
MGP_NODShiLtJ_G0028933	Tardbp	77	31.447	MGP_NODShiLtJ_G0029583	Hnrnpdl	64	30.000
MGP_NODShiLtJ_G0028933	Tardbp	77	38.194	MGP_NODShiLtJ_G0029581	Hnrnpd	100	64.000
MGP_NODShiLtJ_G0028933	Tardbp	79	34.021	MGP_NODShiLtJ_G0029769	Msi1	62	34.021
MGP_NODShiLtJ_G0028933	Tardbp	72	38.806	MGP_NODShiLtJ_G0033137	Elavl1	59	31.481
MGP_NODShiLtJ_G0028933	Tardbp	88	31.818	MGP_NODShiLtJ_G0017353	Dazap1	89	35.065
MGP_NODShiLtJ_G0028933	Tardbp	94	30.282	MGP_NODShiLtJ_G0030538	Hnrnpa2b1	66	30.348
MGP_NODShiLtJ_G0028933	Tardbp	79	31.818	MGP_NODShiLtJ_G0018774	Msi2	100	35.398