EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0029581 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 25434 bases
Position: chr5:114374175-114399608
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0072431	CBFNT	PF08143.11	5.2e-11	1	1
MGP_NODShiLtJ_P0072429	CBFNT	PF08143.11	5.9e-11	1	1
MGP_NODShiLtJ_P0072430	CBFNT	PF08143.11	6.9e-11	1	1
MGP_NODShiLtJ_P0072428	CBFNT	PF08143.11	7.6e-11	1	1
MGP_NODShiLtJ_P0072431	RRM_1	PF00076.22	7.4e-36	1	2
MGP_NODShiLtJ_P0072431	RRM_1	PF00076.22	7.4e-36	2	2
MGP_NODShiLtJ_P0072429	RRM_1	PF00076.22	9e-36	1	2
MGP_NODShiLtJ_P0072429	RRM_1	PF00076.22	9e-36	2	2
MGP_NODShiLtJ_P0072430	RRM_1	PF00076.22	1.2e-35	1	2
MGP_NODShiLtJ_P0072430	RRM_1	PF00076.22	1.2e-35	2	2
MGP_NODShiLtJ_P0072428	RRM_1	PF00076.22	1.4e-35	1	2
MGP_NODShiLtJ_P0072428	RRM_1	PF00076.22	1.4e-35	2	2
MGP_NODShiLtJ_P0072437	RRM_1	PF00076.22	2.3e-23	1	1
MGP_NODShiLtJ_P0072438	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0072428	-	6804	XM_006534735	MGP_NODShiLtJ_P0072428	355 (aa)	XP_006534798	Q60668
MGP_NODShiLtJ_T0072429	-	2000	-	MGP_NODShiLtJ_P0072429	306 (aa)	-	-
MGP_NODShiLtJ_T0072437	-	493	-	MGP_NODShiLtJ_P0072437	107 (aa)	-	-
MGP_NODShiLtJ_T0072436	-	425	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0072435	-	1104	-	MGP_NODShiLtJ_P0072435	86 (aa)	-	-
MGP_NODShiLtJ_T0072434	-	699	-	MGP_NODShiLtJ_P0072434	131 (aa)	-	-
MGP_NODShiLtJ_T0072433	-	737	-	MGP_NODShiLtJ_P0072433	150 (aa)	-	-
MGP_NODShiLtJ_T0072432	-	1117	-	MGP_NODShiLtJ_P0072432	215 (aa)	-	-
MGP_NODShiLtJ_T0072431	-	1537	-	MGP_NODShiLtJ_P0072431	287 (aa)	-	-
MGP_NODShiLtJ_T0072430	-	1670	-	MGP_NODShiLtJ_P0072430	336 (aa)	-	-
MGP_NODShiLtJ_T0072438	-	478	-	MGP_NODShiLtJ_P0072438	25 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0029581's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0029581's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0029581	Hnrnpd	100	56.000	MGP_NODShiLtJ_G0017353	Dazap1	98	41.935
MGP_NODShiLtJ_G0029581	Hnrnpd	57	31.884	MGP_NODShiLtJ_G0029897	Snrnp35	57	31.884
MGP_NODShiLtJ_G0029581	Hnrnpd	100	88.000	MGP_NODShiLtJ_G0018120	Hnrnpab	81	70.940
MGP_NODShiLtJ_G0029581	Hnrnpd	70	32.000	MGP_NODShiLtJ_G0028254	Elavl2	58	31.169
MGP_NODShiLtJ_G0029581	Hnrnpd	100	64.000	MGP_NODShiLtJ_G0028933	Tardbp	77	38.194
MGP_NODShiLtJ_G0029581	Hnrnpd	100	72.000	MGP_NODShiLtJ_G0018774	Msi2	100	53.097
MGP_NODShiLtJ_G0029581	Hnrnpd	100	68.000	MGP_NODShiLtJ_G0029769	Msi1	59	49.485
MGP_NODShiLtJ_G0029581	Hnrnpd	55	35.593	MGP_NODShiLtJ_G0030780	Tia1	69	38.462
MGP_NODShiLtJ_G0029581	Hnrnpd	71	33.333	MGP_NODShiLtJ_G0019842	Slirp	70	33.333
MGP_NODShiLtJ_G0029581	Hnrnpd	70	34.667	MGP_NODShiLtJ_G0035337	Rbm3	80	36.709
MGP_NODShiLtJ_G0029581	Hnrnpd	100	37.838	MGP_NODShiLtJ_G0020467	Hnrnpa0	86	34.173
MGP_NODShiLtJ_G0029581	Hnrnpd	100	80.000	MGP_NODShiLtJ_G0029583	Hnrnpdl	89	65.278
MGP_NODShiLtJ_G0029581	Hnrnpd	84	37.363	MGP_NODShiLtJ_G0035535	Rbmx	83	43.750
MGP_NODShiLtJ_G0029581	Hnrnpd	51	36.364	MGP_NODShiLtJ_G0026770	Rbm38	51	36.364
MGP_NODShiLtJ_G0029581	Hnrnpd	97	44.545	MGP_NODShiLtJ_G0030538	Hnrnpa2b1	72	41.148
MGP_NODShiLtJ_G0029581	Hnrnpd	84	36.559	MGP_NODShiLtJ_G0017347	Cirbp	83	38.776
MGP_NODShiLtJ_G0029581	Hnrnpd	69	35.294	MGP_NODShiLtJ_G0015900	Boll	51	34.783