EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0029769 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 30841 bases
Position: chr5:131890376-131921216
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0073322	RRM_1	PF00076.22	6.9e-33	1	2
MGP_NODShiLtJ_P0073322	RRM_1	PF00076.22	6.9e-33	2	2
MGP_NODShiLtJ_P0073323	RRM_1	PF00076.22	1.6e-28	1	2
MGP_NODShiLtJ_P0073323	RRM_1	PF00076.22	1.6e-28	2	2
MGP_NODShiLtJ_P0073327	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0073324	-	367	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0073325	-	806	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0073326	-	581	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0073327	-	726	-	MGP_NODShiLtJ_P0073327	196 (aa)	-	-
MGP_NODShiLtJ_T0073321	-	2626	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0073322	-	2489	-	MGP_NODShiLtJ_P0073322	362 (aa)	-	-
MGP_NODShiLtJ_T0073323	-	807	-	MGP_NODShiLtJ_P0073323	268 (aa)	-	-
MGP_NODShiLtJ_T0073328	-	599	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0029769's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0029769's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0029769	Msi1	88	42.308	MGP_NODShiLtJ_G0017353	Dazap1	98	44.311
MGP_NODShiLtJ_G0029769	Msi1	58	48.052	MGP_NODShiLtJ_G0029583	Hnrnpdl	75	39.676
MGP_NODShiLtJ_G0029769	Msi1	59	49.485	MGP_NODShiLtJ_G0029581	Hnrnpd	100	68.000
MGP_NODShiLtJ_G0029769	Msi1	62	34.021	MGP_NODShiLtJ_G0028933	Tardbp	79	34.021
MGP_NODShiLtJ_G0029769	Msi1	56	41.379	MGP_NODShiLtJ_G0032890	Tial1	69	31.469
MGP_NODShiLtJ_G0029769	Msi1	57	42.949	MGP_NODShiLtJ_G0020467	Hnrnpa0	59	43.646
MGP_NODShiLtJ_G0029769	Msi1	61	51.064	MGP_NODShiLtJ_G0026770	Rbm38	66	46.809
MGP_NODShiLtJ_G0029769	Msi1	58	48.052	MGP_NODShiLtJ_G0018120	Hnrnpab	79	40.800
MGP_NODShiLtJ_G0029769	Msi1	99	75.665	MGP_NODShiLtJ_G0018774	Msi2	100	90.323
MGP_NODShiLtJ_G0029769	Msi1	51	38.983	MGP_NODShiLtJ_G0017347	Cirbp	87	40.351
MGP_NODShiLtJ_G0029769	Msi1	61	43.750	MGP_NODShiLtJ_G0030538	Hnrnpa2b1	91	41.379