EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0030163 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 14836 bases
Position: chr5:164838579-164853414
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0075488	zf-CCCH	PF00642.24	1.1e-20	1	2
MGP_NODShiLtJ_P0075488	zf-CCCH	PF00642.24	1.1e-20	2	2
MGP_NODShiLtJ_P0075483	zf-CCCH	PF00642.24	3e-20	1	2
MGP_NODShiLtJ_P0075483	zf-CCCH	PF00642.24	3e-20	2	2
MGP_NODShiLtJ_P0075486	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_NODShiLtJ_P0075486	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_NODShiLtJ_P0075485	zf-CCCH	PF00642.24	5.9e-20	1	2
MGP_NODShiLtJ_P0075485	zf-CCCH	PF00642.24	5.9e-20	2	2
MGP_NODShiLtJ_P0075484	zf-CCCH	PF00642.24	2.4e-15	1	2
MGP_NODShiLtJ_P0075484	zf-CCCH	PF00642.24	2.4e-15	2	2
MGP_NODShiLtJ_P0075484	zf-CCHC	PF00098.23	5.5e-06	1	1
MGP_NODShiLtJ_P0075483	zf-CCHC	PF00098.23	6.6e-06	1	1
MGP_NODShiLtJ_P0075486	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_NODShiLtJ_P0075485	zf-CCHC	PF00098.23	7.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0075489	-	2970	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0075488	-	835	-	MGP_NODShiLtJ_P0075488	207 (aa)	-	-
MGP_NODShiLtJ_T0075483	-	1713	XM_006504845	MGP_NODShiLtJ_P0075483	243 (aa)	XP_006504908	Q8BQZ5
MGP_NODShiLtJ_T0075487	-	1205	-	MGP_NODShiLtJ_P0075487	62 (aa)	-	-
MGP_NODShiLtJ_T0075486	-	1387	-	MGP_NODShiLtJ_P0075486	244 (aa)	-	-
MGP_NODShiLtJ_T0075485	-	1756	-	MGP_NODShiLtJ_P0075485	269 (aa)	-	-
MGP_NODShiLtJ_T0075484	-	1606	-	MGP_NODShiLtJ_P0075484	211 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0030163's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0030163's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0030163	Cpsf4	86	52.358	MGP_NODShiLtJ_G0019208	Cpsf4l	82	62.400