EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0030639 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 178188 bases
Position: chr6:73721623-73899810
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	1	9
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	2	9
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	3	9
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	4	9
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	5	9
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	6	9
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	7	9
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	8	9
MGP_NODShiLtJ_P0077532	zf-C2H2	PF00096.26	5.6e-59	9	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	1	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	2	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	3	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	4	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	5	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	6	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	7	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	8	9
MGP_NODShiLtJ_P0077527	zf-C2H2	PF00096.26	1e-58	9	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	1	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	2	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	3	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	4	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	5	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	6	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	7	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	8	9
MGP_NODShiLtJ_P0077530	zf-C2H2	PF00096.26	1e-48	9	9
MGP_NODShiLtJ_P0077529	zf-C2H2	PF00096.26	8.1e-27	1	5
MGP_NODShiLtJ_P0077529	zf-C2H2	PF00096.26	8.1e-27	2	5
MGP_NODShiLtJ_P0077529	zf-C2H2	PF00096.26	8.1e-27	3	5
MGP_NODShiLtJ_P0077529	zf-C2H2	PF00096.26	8.1e-27	4	5
MGP_NODShiLtJ_P0077529	zf-C2H2	PF00096.26	8.1e-27	5	5
MGP_NODShiLtJ_P0077532	zf-met	PF12874.7	1.5e-20	1	3
MGP_NODShiLtJ_P0077532	zf-met	PF12874.7	1.5e-20	2	3
MGP_NODShiLtJ_P0077532	zf-met	PF12874.7	1.5e-20	3	3
MGP_NODShiLtJ_P0077527	zf-met	PF12874.7	2.7e-20	1	3
MGP_NODShiLtJ_P0077527	zf-met	PF12874.7	2.7e-20	2	3
MGP_NODShiLtJ_P0077527	zf-met	PF12874.7	2.7e-20	3	3
MGP_NODShiLtJ_P0077530	zf-met	PF12874.7	8.8e-17	1	3
MGP_NODShiLtJ_P0077530	zf-met	PF12874.7	8.8e-17	2	3
MGP_NODShiLtJ_P0077530	zf-met	PF12874.7	8.8e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0077527	-	2155	XM_006506600	MGP_NODShiLtJ_P0077527	599 (aa)	XP_006506663	Q9CXE0
MGP_NODShiLtJ_T0077531	-	3964	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0077530	-	1488	-	MGP_NODShiLtJ_P0077530	415 (aa)	-	-
MGP_NODShiLtJ_T0077533	-	1920	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0077532	-	1740	-	MGP_NODShiLtJ_P0077532	579 (aa)	-	-
MGP_NODShiLtJ_T0077528	-	1930	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0077529	-	984	-	MGP_NODShiLtJ_P0077529	221 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0030639's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0030639's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0030639	Prdm5	86	46.739	MGP_NODShiLtJ_G0024432	Zfp236	76	43.860
MGP_NODShiLtJ_G0030639	Prdm5	72	48.760	MGP_NODShiLtJ_G0031938	Zfp715	66	39.333
MGP_NODShiLtJ_G0030639	Prdm5	91	48.387	MGP_NODShiLtJ_G0031804	Zfp420	95	41.722
MGP_NODShiLtJ_G0030639	Prdm5	69	47.857	MGP_NODShiLtJ_G0031629	Zfp112	68	39.711
MGP_NODShiLtJ_G0030639	Prdm5	95	43.220	MGP_NODShiLtJ_G0023048	Zfp677	78	36.027
MGP_NODShiLtJ_G0030639	Prdm5	79	40.244	MGP_NODShiLtJ_G0029310	Zbtb49	96	45.070
MGP_NODShiLtJ_G0030639	Prdm5	83	38.014	MGP_NODShiLtJ_G0020540	Zfp759	94	38.870
MGP_NODShiLtJ_G0030639	Prdm5	76	49.451	MGP_NODShiLtJ_G0034217	Zfp26	70	49.451
MGP_NODShiLtJ_G0030639	Prdm5	67	50.847	MGP_NODShiLtJ_G0033947	Zfp1	67	40.167
MGP_NODShiLtJ_G0030639	Prdm5	75	34.545	MGP_NODShiLtJ_G0026748	Zfp64	69	31.561
MGP_NODShiLtJ_G0030639	Prdm5	96	39.683	MGP_NODShiLtJ_G0023050	Zfp51	98	39.683
MGP_NODShiLtJ_G0030639	Prdm5	85	36.175	MGP_NODShiLtJ_G0020555	Zfp748	93	40.728
MGP_NODShiLtJ_G0030639	Prdm5	77	44.643	MGP_NODShiLtJ_G0030984	Zfp637	83	46.479
MGP_NODShiLtJ_G0030639	Prdm5	84	43.277	MGP_NODShiLtJ_G0020539	Rslcan18	71	38.800
MGP_NODShiLtJ_G0030639	Prdm5	90	46.067	MGP_NODShiLtJ_G0026710	Zfp334	67	40.000
MGP_NODShiLtJ_G0030639	Prdm5	84	32.735	MGP_NODShiLtJ_G0031387	Zfp865	78	32.895
MGP_NODShiLtJ_G0030639	Prdm5	91	39.062	MGP_NODShiLtJ_G0021849	Zfp251	88	39.062
MGP_NODShiLtJ_G0030639	Prdm5	67	37.584	MGP_NODShiLtJ_G0032825	Maz	61	35.714
MGP_NODShiLtJ_G0030639	Prdm5	84	36.545	MGP_NODShiLtJ_G0018250	Zfp867	95	36.545
MGP_NODShiLtJ_G0030639	Prdm5	79	46.377	MGP_NODShiLtJ_G0023077	Zscan10	82	35.235
MGP_NODShiLtJ_G0030639	Prdm5	70	48.315	MGP_NODShiLtJ_G0023070	Zfp945	82	35.252
MGP_NODShiLtJ_G0030639	Prdm5	68	48.544	MGP_NODShiLtJ_G0034030	Snai3	55	42.336
MGP_NODShiLtJ_G0030639	Prdm5	74	37.838	MGP_NODShiLtJ_G0032844	E430018J23Rik	71	37.838
MGP_NODShiLtJ_G0030639	Prdm5	77	38.550	MGP_NODShiLtJ_G0032842	9130019O22Rik	70	38.550
MGP_NODShiLtJ_G0030639	Prdm5	74	37.838	MGP_NODShiLtJ_G0032843	-	71	37.838
MGP_NODShiLtJ_G0030639	Prdm5	73	40.562	MGP_NODShiLtJ_G0032840	Zfp768	53	43.571
MGP_NODShiLtJ_G0030639	Prdm5	88	42.857	MGP_NODShiLtJ_G0018202	Zfp672	86	44.286
MGP_NODShiLtJ_G0030639	Prdm5	61	45.045	MGP_NODShiLtJ_G0026050	Wt1	55	40.876
MGP_NODShiLtJ_G0030639	Prdm5	78	38.571	MGP_NODShiLtJ_G0018107	Zfp454	68	38.571
MGP_NODShiLtJ_G0030639	Prdm5	67	46.667	MGP_NODShiLtJ_G0031667	Zfp574	85	30.051
MGP_NODShiLtJ_G0030639	Prdm5	68	42.361	MGP_NODShiLtJ_G0030504	Repin1	91	33.016
MGP_NODShiLtJ_G0030639	Prdm5	78	34.752	MGP_NODShiLtJ_G0033787	Zfp319	88	34.602
MGP_NODShiLtJ_G0030639	Prdm5	90	42.609	MGP_NODShiLtJ_G0033575	Zfp882	94	35.714
MGP_NODShiLtJ_G0030639	Prdm5	78	47.826	MGP_NODShiLtJ_G0020128	Zkscan4	53	47.826
MGP_NODShiLtJ_G0030639	Prdm5	74	40.104	MGP_NODShiLtJ_G0031379	Zfp628	60	38.208
MGP_NODShiLtJ_G0030639	Prdm5	73	44.286	MGP_NODShiLtJ_G0031630	Zfp235	68	39.404
MGP_NODShiLtJ_G0030639	Prdm5	68	46.154	MGP_NODShiLtJ_G0031634	Zfp108	66	38.411
MGP_NODShiLtJ_G0030639	Prdm5	68	47.826	MGP_NODShiLtJ_G0031636	Zfp61	54	41.102
MGP_NODShiLtJ_G0030639	Prdm5	74	48.913	MGP_NODShiLtJ_G0031637	Zfp94	77	38.489
MGP_NODShiLtJ_G0030639	Prdm5	81	42.941	MGP_NODShiLtJ_G0026280	Zfp661	65	42.941