EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0031223 (Gene tree)
Gene ID: -
Gene Symbol: Ddx47
Alias: 4930588A18Rik|C77285
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 11949 bases
Position: chr6:152485548-152497496
Accession: 1915005
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0080248	ResIII	PF04851.15	1.1e-05	1	1
MGP_NODShiLtJ_P0080240	ResIII	PF04851.15	1.5e-05	1	1
MGP_NODShiLtJ_P0080248	DEAD	PF00270.29	1.7e-48	1	1
MGP_NODShiLtJ_P0080240	DEAD	PF00270.29	2.8e-48	1	1
MGP_NODShiLtJ_P0080247	DEAD	PF00270.29	4.3e-38	1	2
MGP_NODShiLtJ_P0080247	DEAD	PF00270.29	4.3e-38	2	2
MGP_NODShiLtJ_P0080242	DEAD	PF00270.29	1.1e-21	1	1
MGP_NODShiLtJ_P0080245	DEAD	PF00270.29	3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0080245	-	551	-	MGP_NODShiLtJ_P0080245	180 (aa)	-	-
MGP_NODShiLtJ_T0080244	-	4017	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0080247	-	1139	-	MGP_NODShiLtJ_P0080247	379 (aa)	-	-
MGP_NODShiLtJ_T0080246	-	620	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0080241	-	435	-	MGP_NODShiLtJ_P0080241	138 (aa)	-	-
MGP_NODShiLtJ_T0080240	-	1764	-	MGP_NODShiLtJ_P0080240	455 (aa)	-	Q9CWX9
MGP_NODShiLtJ_T0080243	-	978	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0080242	-	607	-	MGP_NODShiLtJ_P0080242	196 (aa)	-	-
MGP_NODShiLtJ_T0080250	-	791	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0080249	-	693	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0080248	-	1078	-	MGP_NODShiLtJ_P0080248	359 (aa)	-	-
MGP_NODShiLtJ_T0080251	-	3272	-	MGP_NODShiLtJ_P0080251	61 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0031223's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0031223's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0031223	Ddx47	85	36.869	MGP_NODShiLtJ_G0021907	Ddx17	57	37.374
MGP_NODShiLtJ_G0031223	Ddx47	84	35.652	MGP_NODShiLtJ_G0025371	Ddx31	61	31.765
MGP_NODShiLtJ_G0031223	Ddx47	94	30.175	MGP_NODShiLtJ_G0017163	Ddx50	61	30.676
MGP_NODShiLtJ_G0031223	Ddx47	86	46.875	MGP_NODShiLtJ_G0019462	Ddx1	60	46.875
MGP_NODShiLtJ_G0031223	Ddx47	86	33.690	MGP_NODShiLtJ_G0016790	D1Pas1	57	34.759
MGP_NODShiLtJ_G0031223	Ddx47	86	38.889	MGP_NODShiLtJ_G0017875	Ddx56	99	35.887
MGP_NODShiLtJ_G0031223	Ddx47	85	31.458	MGP_NODShiLtJ_G0018394	Eif4a1	96	31.458
MGP_NODShiLtJ_G0031223	Ddx47	81	35.977	MGP_NODShiLtJ_G0029900	Ddx55	57	35.977
MGP_NODShiLtJ_G0031223	Ddx47	90	32.095	MGP_NODShiLtJ_G0033644	Ddx39	89	32.620
MGP_NODShiLtJ_G0031223	Ddx47	83	32.011	MGP_NODShiLtJ_G0018712	Ddx52	58	33.428
MGP_NODShiLtJ_G0031223	Ddx47	86	33.690	MGP_NODShiLtJ_G0035370	Ddx3x	56	34.492
MGP_NODShiLtJ_G0031223	Ddx47	93	33.760	MGP_NODShiLtJ_G0020774	Ddx4	56	34.271
MGP_NODShiLtJ_G0031223	Ddx47	96	30.749	MGP_NODShiLtJ_G0019335	Eif4a3	94	32.041
MGP_NODShiLtJ_G0031223	Ddx47	91	31.806	MGP_NODShiLtJ_G0016413	Ddx59	60	33.602
MGP_NODShiLtJ_G0031223	Ddx47	85	33.333	MGP_NODShiLtJ_G0020442	Ddx41	58	35.556
MGP_NODShiLtJ_G0031223	Ddx47	66	35.593	MGP_NODShiLtJ_G0030699	Gm5580	61	33.175
MGP_NODShiLtJ_G0031223	Ddx47	93	31.759	MGP_NODShiLtJ_G0034513	Ddx6	78	32.987
MGP_NODShiLtJ_G0031223	Ddx47	66	35.593	MGP_NODShiLtJ_G0030700	Gm8994	61	33.175
MGP_NODShiLtJ_G0031223	Ddx47	94	30.548	MGP_NODShiLtJ_G0022507	Eif4a2	94	32.637
MGP_NODShiLtJ_G0031223	Ddx47	90	31.926	MGP_NODShiLtJ_G0023455	Ddx39b	88	34.037
MGP_NODShiLtJ_G0031223	Ddx47	70	49.398	MGP_NODShiLtJ_G0033877	Ddx28	72	33.079
MGP_NODShiLtJ_G0031223	Ddx47	91	34.218	MGP_NODShiLtJ_G0034865	Ddx43	59	35.678
MGP_NODShiLtJ_G0031223	Ddx47	88	39.159	MGP_NODShiLtJ_G0016284	Ddx18	59	40.129
MGP_NODShiLtJ_G0031223	Ddx47	80	37.389	MGP_NODShiLtJ_G0019166	Ddx5	71	37.457
MGP_NODShiLtJ_G0031223	Ddx47	95	45.824	MGP_NODShiLtJ_G0033504	Ddx49	97	49.271