EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0031804 (Gene tree)
Gene ID: -
Gene Symbol: Zfp420
Alias: B230119D13|B230312I18Rik|mszf59-1|mszf70
Full Name: zinc finger protein 420
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 17082 bases
Position: chr7:30456558-30473639
Accession: 2444666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	1	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	2	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	3	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	4	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	5	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	6	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	7	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	8	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	9	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	10	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	11	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	12	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	13	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	14	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	15	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	16	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	17	18
MGP_NODShiLtJ_P0082442	zf-C2H2	PF00096.26	2.6e-113	18	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	1	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	2	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	3	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	4	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	5	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	6	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	7	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	8	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	9	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	10	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	11	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	12	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	13	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	14	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	15	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	16	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	17	18
MGP_NODShiLtJ_P0082445	zf-C2H2	PF00096.26	2.6e-113	18	18
MGP_NODShiLtJ_P0082442	zf-met	PF12874.7	8.3e-08	1	1
MGP_NODShiLtJ_P0082445	zf-met	PF12874.7	8.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0082443	-	689	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082442	-	2537	XM_006539873	MGP_NODShiLtJ_P0082442	578 (aa)	XP_006539936	Q7TMN8
MGP_NODShiLtJ_T0082445	-	2743	-	MGP_NODShiLtJ_P0082445	578 (aa)	-	-
MGP_NODShiLtJ_T0082444	-	2983	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082446	-	764	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0031804's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0031804's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0031804	Zfp420	95	41.722	MGP_NODShiLtJ_G0030639	Prdm5	91	48.387
MGP_NODShiLtJ_G0031804	Zfp420	97	44.706	MGP_NODShiLtJ_G0028853	Zbtb17	69	44.706
MGP_NODShiLtJ_G0031804	Zfp420	99	56.553	MGP_NODShiLtJ_G0031630	Zfp235	72	56.553
MGP_NODShiLtJ_G0031804	Zfp420	99	57.095	MGP_NODShiLtJ_G0031637	Zfp94	78	57.095
MGP_NODShiLtJ_G0031804	Zfp420	99	55.310	MGP_NODShiLtJ_G0031636	Zfp61	59	55.310
MGP_NODShiLtJ_G0031804	Zfp420	99	55.556	MGP_NODShiLtJ_G0031634	Zfp108	79	55.556
MGP_NODShiLtJ_G0031804	Zfp420	98	38.136	MGP_NODShiLtJ_G0031379	Zfp628	60	38.748
MGP_NODShiLtJ_G0031804	Zfp420	98	55.210	MGP_NODShiLtJ_G0023050	Zfp51	88	55.210
MGP_NODShiLtJ_G0031804	Zfp420	98	37.309	MGP_NODShiLtJ_G0033787	Zfp319	93	36.919
MGP_NODShiLtJ_G0031804	Zfp420	99	36.677	MGP_NODShiLtJ_G0031667	Zfp574	93	37.533
MGP_NODShiLtJ_G0031804	Zfp420	99	60.656	MGP_NODShiLtJ_G0021849	Zfp251	78	60.656
MGP_NODShiLtJ_G0031804	Zfp420	99	37.634	MGP_NODShiLtJ_G0031387	Zfp865	80	37.634
MGP_NODShiLtJ_G0031804	Zfp420	95	30.691	MGP_NODShiLtJ_G0031388	-	66	31.343
MGP_NODShiLtJ_G0031804	Zfp420	99	55.773	MGP_NODShiLtJ_G0034217	Zfp26	80	55.773
MGP_NODShiLtJ_G0031804	Zfp420	99	56.050	MGP_NODShiLtJ_G0020555	Zfp748	93	56.050
MGP_NODShiLtJ_G0031804	Zfp420	99	47.059	MGP_NODShiLtJ_G0024432	Zfp236	79	47.059
MGP_NODShiLtJ_G0031804	Zfp420	98	54.648	MGP_NODShiLtJ_G0023048	Zfp677	89	54.648
MGP_NODShiLtJ_G0031804	Zfp420	98	56.275	MGP_NODShiLtJ_G0020539	Rslcan18	71	56.275
MGP_NODShiLtJ_G0031804	Zfp420	98	39.286	MGP_NODShiLtJ_G0026748	Zfp64	69	36.504
MGP_NODShiLtJ_G0031804	Zfp420	99	51.196	MGP_NODShiLtJ_G0020540	Zfp759	88	50.364
MGP_NODShiLtJ_G0031804	Zfp420	98	48.744	MGP_NODShiLtJ_G0029310	Zbtb49	89	50.000
MGP_NODShiLtJ_G0031804	Zfp420	99	52.489	MGP_NODShiLtJ_G0026710	Zfp334	75	52.489
MGP_NODShiLtJ_G0031804	Zfp420	98	51.882	MGP_NODShiLtJ_G0018250	Zfp867	82	51.882
MGP_NODShiLtJ_G0031804	Zfp420	99	40.991	MGP_NODShiLtJ_G0023077	Zscan10	78	40.930
MGP_NODShiLtJ_G0031804	Zfp420	99	49.905	MGP_NODShiLtJ_G0023070	Zfp945	97	50.469
MGP_NODShiLtJ_G0031804	Zfp420	99	57.692	MGP_NODShiLtJ_G0033947	Zfp1	78	57.692
MGP_NODShiLtJ_G0031804	Zfp420	99	50.909	MGP_NODShiLtJ_G0020128	Zkscan4	54	61.184
MGP_NODShiLtJ_G0031804	Zfp420	98	59.532	MGP_NODShiLtJ_G0018107	Zfp454	71	57.803
MGP_NODShiLtJ_G0031804	Zfp420	97	56.897	MGP_NODShiLtJ_G0030984	Zfp637	75	54.167
MGP_NODShiLtJ_G0031804	Zfp420	95	59.426	MGP_NODShiLtJ_G0026280	Zfp661	72	59.426
MGP_NODShiLtJ_G0031804	Zfp420	99	51.052	MGP_NODShiLtJ_G0031938	Zfp715	71	51.316
MGP_NODShiLtJ_G0031804	Zfp420	98	49.524	MGP_NODShiLtJ_G0018202	Zfp672	89	49.524
MGP_NODShiLtJ_G0031804	Zfp420	98	47.967	MGP_NODShiLtJ_G0032844	E430018J23Rik	67	47.967
MGP_NODShiLtJ_G0031804	Zfp420	98	50.000	MGP_NODShiLtJ_G0033575	Zfp882	85	50.000
MGP_NODShiLtJ_G0031804	Zfp420	98	46.094	MGP_NODShiLtJ_G0030504	Repin1	92	46.094
MGP_NODShiLtJ_G0031804	Zfp420	99	53.722	MGP_NODShiLtJ_G0031629	Zfp112	59	53.722
MGP_NODShiLtJ_G0031804	Zfp420	99	56.115	MGP_NODShiLtJ_G0032840	Zfp768	51	56.071
MGP_NODShiLtJ_G0031804	Zfp420	98	47.967	MGP_NODShiLtJ_G0032843	-	67	47.967
MGP_NODShiLtJ_G0031804	Zfp420	98	48.352	MGP_NODShiLtJ_G0032842	9130019O22Rik	68	48.352