EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0031843 (Gene tree)
Gene ID: -
Gene Symbol: U2af1l4
Alias: AA407033|AF419339|AI451269|AW553050|U2af26|auxiliary factor 26
Full Name: U2 small nuclear RNA auxiliary factor 1-like 4
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 4662 bases
Position: chr7:31222395-31227056
Accession: 2678374
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0082618	zf-CCCH	PF00642.24	3e-13	1	2
MGP_NODShiLtJ_P0082618	zf-CCCH	PF00642.24	3e-13	2	2
MGP_NODShiLtJ_P0082620	zf-CCCH	PF00642.24	3.1e-13	1	2
MGP_NODShiLtJ_P0082620	zf-CCCH	PF00642.24	3.1e-13	2	2
MGP_NODShiLtJ_P0082601	zf-CCCH	PF00642.24	3.9e-13	1	2
MGP_NODShiLtJ_P0082601	zf-CCCH	PF00642.24	3.9e-13	2	2
MGP_NODShiLtJ_P0082598	zf-CCCH	PF00642.24	4.4e-13	1	2
MGP_NODShiLtJ_P0082598	zf-CCCH	PF00642.24	4.4e-13	2	2
MGP_NODShiLtJ_P0082617	zf-CCCH	PF00642.24	6e-09	1	1
MGP_NODShiLtJ_P0082599	zf-CCCH	PF00642.24	1.2e-06	1	1
MGP_NODShiLtJ_P0082632	zf-CCCH	PF00642.24	6.3e-06	1	1
MGP_NODShiLtJ_P0082620	RRM_1	PF00076.22	1.2e-07	1	1
MGP_NODShiLtJ_P0082622	RRM_1	PF00076.22	1.2e-07	1	1
MGP_NODShiLtJ_P0082632	RRM_1	PF00076.22	2.9e-07	1	1
MGP_NODShiLtJ_P0082599	RRM_1	PF00076.22	3.2e-07	1	1
MGP_NODShiLtJ_P0082601	RRM_1	PF00076.22	3.5e-07	1	1
MGP_NODShiLtJ_P0082617	RRM_1	PF00076.22	3.9e-07	1	1
MGP_NODShiLtJ_P0082598	RRM_1	PF00076.22	4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0082598	-	884	-	MGP_NODShiLtJ_P0082598	220 (aa)	-	-
MGP_NODShiLtJ_T0082632	-	582	-	MGP_NODShiLtJ_P0082632	193 (aa)	-	-
MGP_NODShiLtJ_T0082630	-	626	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082631	-	202	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082618	-	564	-	MGP_NODShiLtJ_P0082618	187 (aa)	-	-
MGP_NODShiLtJ_T0082619	-	590	-	MGP_NODShiLtJ_P0082619	102 (aa)	-	-
MGP_NODShiLtJ_T0082597	-	439	-	MGP_NODShiLtJ_P0082597	37 (aa)	-	-
MGP_NODShiLtJ_T0082596	-	583	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082595	-	747	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082610	-	505	-	MGP_NODShiLtJ_P0082610	37 (aa)	-	-
MGP_NODShiLtJ_T0082611	-	629	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082599	-	781	-	MGP_NODShiLtJ_P0082599	188 (aa)	-	-
MGP_NODShiLtJ_T0082613	-	562	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082614	-	860	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082615	-	2892	-	MGP_NODShiLtJ_P0082615	146 (aa)	-	-
MGP_NODShiLtJ_T0082616	-	2723	-	MGP_NODShiLtJ_P0082616	220 (aa)	-	-
MGP_NODShiLtJ_T0082617	-	651	-	MGP_NODShiLtJ_P0082617	216 (aa)	-	-
MGP_NODShiLtJ_T0082629	-	572	-	MGP_NODShiLtJ_P0082629	52 (aa)	-	-
MGP_NODShiLtJ_T0082628	-	500	-	MGP_NODShiLtJ_P0082628	24 (aa)	-	-
MGP_NODShiLtJ_T0082625	-	399	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082624	-	519	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082627	-	568	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082626	-	728	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082621	-	353	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082620	-	546	-	MGP_NODShiLtJ_P0082620	181 (aa)	-	-
MGP_NODShiLtJ_T0082623	-	382	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082622	-	405	-	MGP_NODShiLtJ_P0082622	119 (aa)	-	-
MGP_NODShiLtJ_T0082607	-	410	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082606	-	883	-	MGP_NODShiLtJ_P0082606	37 (aa)	-	-
MGP_NODShiLtJ_T0082605	-	566	-	MGP_NODShiLtJ_P0082605	46 (aa)	-	-
MGP_NODShiLtJ_T0082604	-	502	-	MGP_NODShiLtJ_P0082604	37 (aa)	-	-
MGP_NODShiLtJ_T0082603	-	656	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082602	-	635	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082601	-	835	-	MGP_NODShiLtJ_P0082601	210 (aa)	-	-
MGP_NODShiLtJ_T0082600	-	715	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0082612	-	668	-	MGP_NODShiLtJ_P0082612	55 (aa)	-	-
MGP_NODShiLtJ_T0082609	-	3009	-	MGP_NODShiLtJ_P0082609	220 (aa)	-	-
MGP_NODShiLtJ_T0082608	-	874	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0031843's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0031843's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0031843	U2af1l4	100	90.385	MGP_NODShiLtJ_G0023310	U2af1	83	86.935