EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0033644 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 11707 bases
Position: chr8:93426424-93438130
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0089189	ResIII	PF04851.15	3e-05	1	1
MGP_NODShiLtJ_P0089192	ResIII	PF04851.15	3e-05	1	1
MGP_NODShiLtJ_P0089193	ResIII	PF04851.15	3e-05	1	1
MGP_NODShiLtJ_P0089189	DEAD	PF00270.29	4.1e-38	1	1
MGP_NODShiLtJ_P0089192	DEAD	PF00270.29	4.1e-38	1	1
MGP_NODShiLtJ_P0089193	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0089189	-	1656	XM_006531332	MGP_NODShiLtJ_P0089189	427 (aa)	XP_006531395	Q8VDW0
MGP_NODShiLtJ_T0089194	-	754	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0089192	-	3858	-	MGP_NODShiLtJ_P0089192	427 (aa)	-	-
MGP_NODShiLtJ_T0089193	-	1793	-	MGP_NODShiLtJ_P0089193	427 (aa)	-	-
MGP_NODShiLtJ_T0089190	-	1927	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0089191	-	1551	-	MGP_NODShiLtJ_P0089191	208 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0033644's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0033644's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0033644	Ddx39	85	31.183	MGP_NODShiLtJ_G0034335	Ddx25	81	31.328
MGP_NODShiLtJ_G0033644	Ddx39	87	33.156	MGP_NODShiLtJ_G0033504	Ddx49	97	33.333
MGP_NODShiLtJ_G0033644	Ddx39	90	32.203	MGP_NODShiLtJ_G0016284	Ddx18	52	38.554
MGP_NODShiLtJ_G0033644	Ddx39	86	37.197	MGP_NODShiLtJ_G0019335	Eif4a3	89	37.197
MGP_NODShiLtJ_G0033644	Ddx39	89	32.620	MGP_NODShiLtJ_G0031223	Ddx47	90	32.095
MGP_NODShiLtJ_G0033644	Ddx39	76	41.509	MGP_NODShiLtJ_G0030700	Gm8994	82	34.951
MGP_NODShiLtJ_G0033644	Ddx39	86	38.108	MGP_NODShiLtJ_G0022507	Eif4a2	90	38.108
MGP_NODShiLtJ_G0033644	Ddx39	74	34.969	MGP_NODShiLtJ_G0017875	Ddx56	61	32.051
MGP_NODShiLtJ_G0033644	Ddx39	76	41.509	MGP_NODShiLtJ_G0030699	Gm5580	56	39.086
MGP_NODShiLtJ_G0033644	Ddx39	100	90.888	MGP_NODShiLtJ_G0023455	Ddx39b	100	90.888
MGP_NODShiLtJ_G0033644	Ddx39	96	34.223	MGP_NODShiLtJ_G0034513	Ddx6	82	34.750
MGP_NODShiLtJ_G0033644	Ddx39	90	30.392	MGP_NODShiLtJ_G0035370	Ddx3x	56	31.565
MGP_NODShiLtJ_G0033644	Ddx39	90	34.074	MGP_NODShiLtJ_G0027535	Ddx20	50	34.140
MGP_NODShiLtJ_G0033644	Ddx39	90	30.392	MGP_NODShiLtJ_G0016790	D1Pas1	57	31.565
MGP_NODShiLtJ_G0033644	Ddx39	90	32.316	MGP_NODShiLtJ_G0033936	Ddx19b	81	32.316
MGP_NODShiLtJ_G0033644	Ddx39	90	36.010	MGP_NODShiLtJ_G0018394	Eif4a1	94	36.010