EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0034273 (Gene tree)
Gene ID: -
Gene Symbol: Elavl3
Alias: 2600009P04Rik|Huc|PLE21|mHuC
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 3 (Hu antigen C)
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 36959 bases
Position: chr9:22398705-22435663
Accession: 109157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0091051	RRM_5	PF13893.6	4.1e-13	1	2
MGP_NODShiLtJ_P0091051	RRM_5	PF13893.6	4.1e-13	2	2
MGP_NODShiLtJ_P0091051	RRM_1	PF00076.22	5.3e-64	1	3
MGP_NODShiLtJ_P0091051	RRM_1	PF00076.22	5.3e-64	2	3
MGP_NODShiLtJ_P0091051	RRM_1	PF00076.22	5.3e-64	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0091052	-	1014	-	MGP_NODShiLtJ_P0091052	337 (aa)	-	-
MGP_NODShiLtJ_T0091051	-	5009	XM_006510021	MGP_NODShiLtJ_P0091051	367 (aa)	XP_006510084	Q60900

Gene Model

Click here to download MGP_NODShiLtJ_G0034273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0034273's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0034273	Elavl3	70	39.506	MGP_NODShiLtJ_G0024036	Celf4	67	39.744
MGP_NODShiLtJ_G0034273	Elavl3	59	30.488	MGP_NODShiLtJ_G0026654	Pabpc1l	63	38.889
MGP_NODShiLtJ_G0034273	Elavl3	90	37.179	MGP_NODShiLtJ_G0030780	Tia1	98	31.169
MGP_NODShiLtJ_G0034273	Elavl3	100	78.400	MGP_NODShiLtJ_G0028254	Elavl2	100	79.292
MGP_NODShiLtJ_G0034273	Elavl3	50	36.207	MGP_NODShiLtJ_G0025600	Rbms1	51	33.645
MGP_NODShiLtJ_G0034273	Elavl3	71	42.391	MGP_NODShiLtJ_G0025961	Celf1	57	43.590
MGP_NODShiLtJ_G0034273	Elavl3	92	33.735	MGP_NODShiLtJ_G0028543	Pabpc4	94	31.061
MGP_NODShiLtJ_G0034273	Elavl3	63	37.931	MGP_NODShiLtJ_G0035199	Rbms3	70	38.562
MGP_NODShiLtJ_G0034273	Elavl3	92	36.145	MGP_NODShiLtJ_G0022964	Pabpc6	62	36.145
MGP_NODShiLtJ_G0034273	Elavl3	90	36.145	MGP_NODShiLtJ_G0027002	Pabpc4l	96	36.145
MGP_NODShiLtJ_G0034273	Elavl3	73	40.741	MGP_NODShiLtJ_G0025170	Celf2	82	34.667
MGP_NODShiLtJ_G0034273	Elavl3	92	36.145	MGP_NODShiLtJ_G0021633	Pabpc1	52	36.145
MGP_NODShiLtJ_G0034273	Elavl3	77	38.272	MGP_NODShiLtJ_G0017421	Celf5	65	38.462
MGP_NODShiLtJ_G0034273	Elavl3	62	36.667	MGP_NODShiLtJ_G0017710	Rbms2	52	36.667
MGP_NODShiLtJ_G0034273	Elavl3	69	33.708	MGP_NODShiLtJ_G0035535	Rbmx	86	33.708
MGP_NODShiLtJ_G0034273	Elavl3	90	34.940	MGP_NODShiLtJ_G0024199	Pabpc2	61	34.940
MGP_NODShiLtJ_G0034273	Elavl3	90	37.179	MGP_NODShiLtJ_G0032890	Tial1	73	37.179
MGP_NODShiLtJ_G0034273	Elavl3	62	37.500	MGP_NODShiLtJ_G0017347	Cirbp	79	37.500
MGP_NODShiLtJ_G0034273	Elavl3	90	66.867	MGP_NODShiLtJ_G0033137	Elavl1	95	66.265
MGP_NODShiLtJ_G0034273	Elavl3	89	34.940	MGP_NODShiLtJ_G0027371	Celf3	98	35.632
MGP_NODShiLtJ_G0034273	Elavl3	99	80.323	MGP_NODShiLtJ_G0028383	Elavl4	99	79.893
MGP_NODShiLtJ_G0034273	Elavl3	80	41.975	MGP_NODShiLtJ_G0034700	Celf6	57	42.308