EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0034941 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: Dhm2|exo|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 107830 bases
Position: chr9:105366400-105474229
Accession: 891964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0093236	XRN_N	PF03159.18	3e-96	1	1
MGP_NODShiLtJ_P0093232	XRN_N	PF03159.18	1.6e-95	1	1
MGP_NODShiLtJ_P0093231	XRN_N	PF03159.18	1.6e-95	1	1
MGP_NODShiLtJ_P0093233	XRN_N	PF03159.18	9.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0093234	-	3357	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093235	-	6235	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093236	-	3093	-	MGP_NODShiLtJ_P0093236	969 (aa)	-	-
MGP_NODShiLtJ_T0093237	-	3615	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093231	-	5499	XM_006511153	MGP_NODShiLtJ_P0093231	1723 (aa)	XP_006511216	A0A087WNV6
MGP_NODShiLtJ_T0093232	-	10218	-	MGP_NODShiLtJ_P0093232	1719 (aa)	-	-
MGP_NODShiLtJ_T0093233	-	357	-	MGP_NODShiLtJ_P0093233	40 (aa)	-	-
MGP_NODShiLtJ_T0093238	-	844	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093239	-	3046	-	-	- (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0034941's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0034941	Xrn1	90	66.667	MGP_NODShiLtJ_G0026418	Xrn2	71	39.060