EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0035031 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 11457 bases
Position: chr9:116773327-116784783
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0093682	KH_1	PF00013.29	3.3e-50	1	3
MGP_NODShiLtJ_P0093682	KH_1	PF00013.29	3.3e-50	2	3
MGP_NODShiLtJ_P0093682	KH_1	PF00013.29	3.3e-50	3	3
MGP_NODShiLtJ_P0093684	KH_1	PF00013.29	2.7e-32	1	2
MGP_NODShiLtJ_P0093684	KH_1	PF00013.29	2.7e-32	2	2
MGP_NODShiLtJ_P0093691	KH_1	PF00013.29	1.5e-21	1	1
MGP_NODShiLtJ_P0093679	KH_1	PF00013.29	1.3e-18	1	1
MGP_NODShiLtJ_P0093686	KH_1	PF00013.29	2.3e-15	1	1
MGP_NODShiLtJ_P0093688	KH_1	PF00013.29	1.2e-13	1	1
MGP_NODShiLtJ_P0093693	KH_1	PF00013.29	5.3e-09	1	1
MGP_NODShiLtJ_P0093684	KH_2	PF07650.17	8.2e-12	1	1
MGP_NODShiLtJ_P0093679	KH_2	PF07650.17	2.3e-06	1	1
MGP_NODShiLtJ_P0093686	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0093690	-	289	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093693	-	924	-	MGP_NODShiLtJ_P0093693	215 (aa)	-	-
MGP_NODShiLtJ_T0093691	-	770	-	MGP_NODShiLtJ_P0093691	168 (aa)	-	-
MGP_NODShiLtJ_T0093694	-	450	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093685	-	477	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093684	-	893	-	MGP_NODShiLtJ_P0093684	197 (aa)	-	-
MGP_NODShiLtJ_T0093687	-	253	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093686	-	752	-	MGP_NODShiLtJ_P0093686	113 (aa)	-	-
MGP_NODShiLtJ_T0093681	-	610	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093679	-	651	XM_006511779	MGP_NODShiLtJ_P0093679	119 (aa)	XP_006511842	A0A087WP16
MGP_NODShiLtJ_T0093683	-	378	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093682	-	1987	-	MGP_NODShiLtJ_P0093682	403 (aa)	-	-
MGP_NODShiLtJ_T0093692	-	314	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0093689	-	846	-	MGP_NODShiLtJ_P0093689	150 (aa)	-	-
MGP_NODShiLtJ_T0093688	-	232	-	MGP_NODShiLtJ_P0093688	77 (aa)	-	-
MGP_NODShiLtJ_T0093680	-	387	-	-	- (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0035031's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0035031	Pcbp4	51	37.363	MGP_NODShiLtJ_G0019570	Nova1	52	37.363
MGP_NODShiLtJ_G0035031	Pcbp4	97	67.826	MGP_NODShiLtJ_G0030783	Pcbp1	98	53.541
MGP_NODShiLtJ_G0035031	Pcbp4	86	31.551	MGP_NODShiLtJ_G0032267	-	77	31.551
MGP_NODShiLtJ_G0035031	Pcbp4	84	32.039	MGP_NODShiLtJ_G0018843	Igf2bp1	59	30.597
MGP_NODShiLtJ_G0035031	Pcbp4	93	70.652	MGP_NODShiLtJ_G0017249	Pcbp3	85	69.811
MGP_NODShiLtJ_G0035031	Pcbp4	76	33.684	MGP_NODShiLtJ_G0027804	Fubp1	72	34.524
MGP_NODShiLtJ_G0035031	Pcbp4	85	31.731	MGP_NODShiLtJ_G0022496	Igf2bp2	62	31.111
MGP_NODShiLtJ_G0035031	Pcbp4	86	33.728	MGP_NODShiLtJ_G0020473	Hnrnpk	78	32.414
MGP_NODShiLtJ_G0035031	Pcbp4	83	36.000	MGP_NODShiLtJ_G0025424	Fubp3	70	36.000
MGP_NODShiLtJ_G0035031	Pcbp4	76	32.323	MGP_NODShiLtJ_G0023770	Khsrp	54	34.091
MGP_NODShiLtJ_G0035031	Pcbp4	98	66.321	MGP_NODShiLtJ_G0022246	Pcbp2	97	59.877
MGP_NODShiLtJ_G0035031	Pcbp4	76	41.538	MGP_NODShiLtJ_G0031556	-	53	41.538
MGP_NODShiLtJ_G0035031	Pcbp4	76	41.538	MGP_NODShiLtJ_G0031557	Nova2	54	41.538