EuRBPDB

Description

Ensembl ID: MGP_NODShiLtJ_G0035472 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 93500 bases
Position: chrX:46596616-46690115
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0095509	ResIII	PF04851.15	1.6e-11	1	1
MGP_NODShiLtJ_P0095508	ResIII	PF04851.15	1.6e-11	1	1
MGP_NODShiLtJ_P0095510	ResIII	PF04851.15	1.6e-11	1	1
MGP_NODShiLtJ_P0095512	ResIII	PF04851.15	2.3e-09	1	1
MGP_NODShiLtJ_P0095508	DEAD	PF00270.29	1e-06	1	1
MGP_NODShiLtJ_P0095510	DEAD	PF00270.29	1e-06	1	1
MGP_NODShiLtJ_P0095509	DEAD	PF00270.29	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0095508	-	3655	XM_006541563	MGP_NODShiLtJ_P0095508	923 (aa)	XP_006541626	Q6PGB8
MGP_NODShiLtJ_T0095509	-	3622	-	MGP_NODShiLtJ_P0095509	939 (aa)	-	-
MGP_NODShiLtJ_T0095514	-	409	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0095513	-	360	-	MGP_NODShiLtJ_P0095513	117 (aa)	-	-
MGP_NODShiLtJ_T0095512	-	1935	-	MGP_NODShiLtJ_P0095512	645 (aa)	-	-
MGP_NODShiLtJ_T0095511	-	4160	-	MGP_NODShiLtJ_P0095511	1012 (aa)	-	-
MGP_NODShiLtJ_T0095510	-	4429	-	MGP_NODShiLtJ_P0095510	923 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0035472	Smarca1	85	42.908	MGP_NODShiLtJ_G0027458	Chd1l	59	43.831
MGP_NODShiLtJ_G0035472	Smarca1	77	31.193	MGP_NODShiLtJ_G0027868	Rad54b	62	30.511
MGP_NODShiLtJ_G0035472	Smarca1	69	31.535	MGP_NODShiLtJ_G0028424	Rad54l	62	32.548
MGP_NODShiLtJ_G0035472	Smarca1	68	30.784	MGP_NODShiLtJ_G0020511	Ercc6l2	74	31.115