EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0035538 (Gene tree)
Gene ID: -
Gene Symbol: Zic3
Alias: Bn|Ka
Full Name: zinc finger protein of the cerebellum 3
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 28842 bases
Position: chrX:57908110-57936951
Accession: 106676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0095702	zf-C2H2	PF00096.26	8.5e-23	1	4
MGP_NODShiLtJ_P0095702	zf-C2H2	PF00096.26	8.5e-23	2	4
MGP_NODShiLtJ_P0095702	zf-C2H2	PF00096.26	8.5e-23	3	4
MGP_NODShiLtJ_P0095702	zf-C2H2	PF00096.26	8.5e-23	4	4
MGP_NODShiLtJ_P0095701	zf-C2H2	PF00096.26	3.4e-21	1	4
MGP_NODShiLtJ_P0095701	zf-C2H2	PF00096.26	3.4e-21	2	4
MGP_NODShiLtJ_P0095701	zf-C2H2	PF00096.26	3.4e-21	3	4
MGP_NODShiLtJ_P0095701	zf-C2H2	PF00096.26	3.4e-21	4	4
MGP_NODShiLtJ_P0095703	zf-C2H2	PF00096.26	2.1e-20	1	4
MGP_NODShiLtJ_P0095703	zf-C2H2	PF00096.26	2.1e-20	2	4
MGP_NODShiLtJ_P0095703	zf-C2H2	PF00096.26	2.1e-20	3	4
MGP_NODShiLtJ_P0095703	zf-C2H2	PF00096.26	2.1e-20	4	4
MGP_NODShiLtJ_P0095702	zf-met	PF12874.7	7.9e-05	1	1
MGP_NODShiLtJ_P0095703	zf-met	PF12874.7	0.00077	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0095702	-	2965	-	MGP_NODShiLtJ_P0095702	246 (aa)	-	-
MGP_NODShiLtJ_T0095703	-	1950	-	MGP_NODShiLtJ_P0095703	456 (aa)	-	-
MGP_NODShiLtJ_T0095700	-	566	XM_006527973	MGP_NODShiLtJ_P0095700	89 (aa)	XP_006528036	Q62521
MGP_NODShiLtJ_T0095701	-	3931	-	MGP_NODShiLtJ_P0095701	466 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0035538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0035538's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0035538	Zic3	64	33.540	MGP_NODShiLtJ_G0026748	Zfp64	56	33.540
MGP_NODShiLtJ_G0035538	Zic3	64	38.849	MGP_NODShiLtJ_G0022379	Snai2	50	38.776