EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0035822 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 2970 bases
Position: chrX:130132625-130135594
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0096753	RRM_5	PF13893.6	7.2e-12	1	2
MGP_NODShiLtJ_P0096753	RRM_5	PF13893.6	7.2e-12	2	2
MGP_NODShiLtJ_P0096753	RRM_1	PF00076.22	1.1e-77	1	4
MGP_NODShiLtJ_P0096753	RRM_1	PF00076.22	1.1e-77	2	4
MGP_NODShiLtJ_P0096753	RRM_1	PF00076.22	1.1e-77	3	4
MGP_NODShiLtJ_P0096753	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0096753	-	2170	-	MGP_NODShiLtJ_P0096753	381 (aa)	-	Q8C7D3

Gene Model

Click here to download MGP_NODShiLtJ_G0035822's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0035822's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0035822	Pabpc5	96	61.111	MGP_NODShiLtJ_G0024199	Pabpc2	62	60.955
MGP_NODShiLtJ_G0035822	Pabpc5	63	34.483	MGP_NODShiLtJ_G0034700	Celf6	51	34.483
MGP_NODShiLtJ_G0035822	Pabpc5	94	37.037	MGP_NODShiLtJ_G0028254	Elavl2	89	37.037
MGP_NODShiLtJ_G0035822	Pabpc5	96	57.967	MGP_NODShiLtJ_G0027002	Pabpc4l	97	57.865
MGP_NODShiLtJ_G0035822	Pabpc5	96	56.944	MGP_NODShiLtJ_G0026654	Pabpc1l	64	57.022
MGP_NODShiLtJ_G0035822	Pabpc5	70	35.955	MGP_NODShiLtJ_G0017421	Celf5	56	35.955
MGP_NODShiLtJ_G0035822	Pabpc5	94	65.556	MGP_NODShiLtJ_G0028543	Pabpc4	100	68.841
MGP_NODShiLtJ_G0035822	Pabpc5	95	58.445	MGP_NODShiLtJ_G0022964	Pabpc6	59	58.470
MGP_NODShiLtJ_G0035822	Pabpc5	93	33.333	MGP_NODShiLtJ_G0030780	Tia1	84	34.247
MGP_NODShiLtJ_G0035822	Pabpc5	95	64.463	MGP_NODShiLtJ_G0021633	Pabpc1	62	64.607