EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0018451 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61|Noh61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 8854 bases
Position: chr11:3396221-3405074
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0028445	ResIII	PF04851.15	9.6e-07	1	1
MGP_NZOHlLtJ_P0028445	DEAD	PF00270.29	7e-40	1	1
MGP_NZOHlLtJ_P0028447	DEAD	PF00270.29	5.9e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0028448	-	621	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0028445	-	1956	XM_011243731	MGP_NZOHlLtJ_P0028445	546 (aa)	XP_011242033	Q9D0R4
MGP_NZOHlLtJ_T0028446	-	527	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0028447	-	764	-	MGP_NZOHlLtJ_P0028447	237 (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0018451's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0018451's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0018451	Ddx56	97	30.328	MGP_NZOHlLtJ_G0023106	-	63	30.736
MGP_NZOHlLtJ_G0018451	Ddx56	95	30.769	MGP_NZOHlLtJ_G0034644	Ddx19a	50	30.159
MGP_NZOHlLtJ_G0018451	Ddx56	95	31.855	MGP_NZOHlLtJ_G0034645	Ddx19b	73	30.151
MGP_NZOHlLtJ_G0018451	Ddx56	80	33.493	MGP_NZOHlLtJ_G0019295	Ddx52	61	30.597
MGP_NZOHlLtJ_G0018451	Ddx56	66	30.789	MGP_NZOHlLtJ_G0017358	D1Pas1	52	30.159
MGP_NZOHlLtJ_G0018451	Ddx56	94	32.627	MGP_NZOHlLtJ_G0034213	Ddx49	59	33.175
MGP_NZOHlLtJ_G0018451	Ddx56	92	30.000	MGP_NZOHlLtJ_G0031638	Gm5580	66	30.000
MGP_NZOHlLtJ_G0018451	Ddx56	98	33.065	MGP_NZOHlLtJ_G0027386	Ddx27	53	31.019
MGP_NZOHlLtJ_G0018451	Ddx56	82	50.000	MGP_NZOHlLtJ_G0020035	Ddx1	53	50.847
MGP_NZOHlLtJ_G0018451	Ddx56	99	35.887	MGP_NZOHlLtJ_G0031887	Ddx47	86	38.889
MGP_NZOHlLtJ_G0018451	Ddx56	61	32.051	MGP_NZOHlLtJ_G0034352	Ddx39	74	34.969
MGP_NZOHlLtJ_G0018451	Ddx56	66	30.366	MGP_NZOHlLtJ_G0036083	Ddx3x	52	30.000