EuRBPDB

Description

Ensembl ID: MGP_NZOHlLtJ_G0018702 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 6733 bases
Position: chr11:50568635-50575367
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0029429	CBFNT	PF08143.11	3.2e-19	1	1
MGP_NZOHlLtJ_P0029430	CBFNT	PF08143.11	3.8e-19	1	1
MGP_NZOHlLtJ_P0029431	CBFNT	PF08143.11	4.2e-19	1	1
MGP_NZOHlLtJ_P0029429	RRM_1	PF00076.22	6.4e-34	1	2
MGP_NZOHlLtJ_P0029429	RRM_1	PF00076.22	6.4e-34	2	2
MGP_NZOHlLtJ_P0029430	RRM_1	PF00076.22	8.5e-34	1	2
MGP_NZOHlLtJ_P0029430	RRM_1	PF00076.22	8.5e-34	2	2
MGP_NZOHlLtJ_P0029431	RRM_1	PF00076.22	1e-33	1	2
MGP_NZOHlLtJ_P0029431	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0029429	-	2359	-	MGP_NZOHlLtJ_P0029429	285 (aa)	-	Q99020
MGP_NZOHlLtJ_T0029430	-	2004	-	MGP_NZOHlLtJ_P0029430	311 (aa)	-	-
MGP_NZOHlLtJ_T0029431	-	1437	-	MGP_NZOHlLtJ_P0029431	332 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0018702	Hnrnpab	79	40.800	MGP_NZOHlLtJ_G0030440	Msi1	58	48.052
MGP_NZOHlLtJ_G0018702	Hnrnpab	82	32.099	MGP_NZOHlLtJ_G0029591	Tardbp	86	33.146
MGP_NZOHlLtJ_G0018702	Hnrnpab	65	31.414	MGP_NZOHlLtJ_G0035416	Celf6	66	32.500
MGP_NZOHlLtJ_G0018702	Hnrnpab	53	33.333	MGP_NZOHlLtJ_G0033843	Elavl1	50	33.333
MGP_NZOHlLtJ_G0018702	Hnrnpab	67	40.351	MGP_NZOHlLtJ_G0017927	Dazap1	99	40.588
MGP_NZOHlLtJ_G0018702	Hnrnpab	57	35.882	MGP_NZOHlLtJ_G0021054	Hnrnpa0	58	35.882
MGP_NZOHlLtJ_G0018702	Hnrnpab	51	33.846	MGP_NZOHlLtJ_G0020409	Slirp	73	33.846
MGP_NZOHlLtJ_G0018702	Hnrnpab	79	72.052	MGP_NZOHlLtJ_G0030244	Hnrnpd	100	88.000
MGP_NZOHlLtJ_G0018702	Hnrnpab	82	58.419	MGP_NZOHlLtJ_G0030246	Hnrnpdl	89	57.292
MGP_NZOHlLtJ_G0018702	Hnrnpab	64	37.368	MGP_NZOHlLtJ_G0031200	Hnrnpa2b1	61	38.068
MGP_NZOHlLtJ_G0018702	Hnrnpab	70	48.039	MGP_NZOHlLtJ_G0019357	Msi2	100	52.212