EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0019352 (Gene tree)
Gene ID: -
Gene Symbol: Srsf1
Alias: 1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1
Full Name: serine/arginine-rich splicing factor 1
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 6371 bases
Position: chr11:89093873-89100243
Accession: 98283
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0032039	RRM_1	PF00076.22	6.3e-34	1	2
MGP_NZOHlLtJ_P0032039	RRM_1	PF00076.22	6.3e-34	2	2
MGP_NZOHlLtJ_P0032038	RRM_1	PF00076.22	2.5e-33	1	2
MGP_NZOHlLtJ_P0032038	RRM_1	PF00076.22	2.5e-33	2	2
MGP_NZOHlLtJ_P0032041	RRM_1	PF00076.22	2.6e-33	1	2
MGP_NZOHlLtJ_P0032041	RRM_1	PF00076.22	2.6e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0032043	-	401	-	MGP_NZOHlLtJ_P0032043	57 (aa)	-	-
MGP_NZOHlLtJ_T0032042	-	895	-	MGP_NZOHlLtJ_P0032042	105 (aa)	-	-
MGP_NZOHlLtJ_T0032038	-	5350	-	MGP_NZOHlLtJ_P0032038	248 (aa)	-	Q6PDM2
MGP_NZOHlLtJ_T0032040	-	645	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0032044	-	758	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0032041	-	1209	-	MGP_NZOHlLtJ_P0032041	253 (aa)	-	-
MGP_NZOHlLtJ_T0032039	-	2946	-	MGP_NZOHlLtJ_P0032039	201 (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0019352's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0019352's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0019352	Srsf1	80	46.988	MGP_NZOHlLtJ_G0020319	Srsf5	96	51.020
MGP_NZOHlLtJ_G0019352	Srsf1	79	79.762	MGP_NZOHlLtJ_G0030436	Srsf9	78	70.330
MGP_NZOHlLtJ_G0019352	Srsf1	82	42.857	MGP_NZOHlLtJ_G0027292	Srsf6	58	40.670