EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0019596 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 23243 bases
Position: chr11:102562342-102585584
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0032880	MMR_HSR1	PF01926.23	0.00022	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0032883	-	441	-	MGP_NZOHlLtJ_P0032883	34 (aa)	-	-
MGP_NZOHlLtJ_T0032882	-	412	-	MGP_NZOHlLtJ_P0032882	83 (aa)	-	-
MGP_NZOHlLtJ_T0032881	-	1967	-	MGP_NZOHlLtJ_P0032881	234 (aa)	-	-
MGP_NZOHlLtJ_T0032880	-	1915	XM_006532586	MGP_NZOHlLtJ_P0032880	216 (aa)	XP_006532649	P35278

Gene Model

Click here to download MGP_NZOHlLtJ_G0019596's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0019596's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0019596	Rab5c	86	38.806	MGP_NZOHlLtJ_G0024437	Rab12	75	36.000
MGP_NZOHlLtJ_G0019596	Rab5c	81	33.702	MGP_NZOHlLtJ_G0033728	Hras	94	33.702
MGP_NZOHlLtJ_G0019596	Rab5c	75	48.447	MGP_NZOHlLtJ_G0023982	Rab11b	74	48.447
MGP_NZOHlLtJ_G0019596	Rab5c	73	35.625	MGP_NZOHlLtJ_G0017784	Rab36	60	35.625
MGP_NZOHlLtJ_G0019596	Rab5c	93	37.379	MGP_NZOHlLtJ_G0027675	Rab33b	89	37.379
MGP_NZOHlLtJ_G0019596	Rab5c	78	32.544	MGP_NZOHlLtJ_G0031955	Kras	98	30.102
MGP_NZOHlLtJ_G0019596	Rab5c	90	47.423	MGP_NZOHlLtJ_G0027439	Rab22a	98	47.423
MGP_NZOHlLtJ_G0019596	Rab5c	90	41.262	MGP_NZOHlLtJ_G0035457	Rab11a	88	49.630
MGP_NZOHlLtJ_G0019596	Rab5c	75	36.585	MGP_NZOHlLtJ_G0036387	Rab39b	77	36.585
MGP_NZOHlLtJ_G0019596	Rab5c	89	34.848	MGP_NZOHlLtJ_G0036792	Rab9	97	34.848
MGP_NZOHlLtJ_G0019596	Rab5c	77	42.442	MGP_NZOHlLtJ_G0031468	Rab7	90	47.727
MGP_NZOHlLtJ_G0019596	Rab5c	90	38.974	MGP_NZOHlLtJ_G0028511	Rab2a	92	38.974
MGP_NZOHlLtJ_G0019596	Rab5c	78	32.544	MGP_NZOHlLtJ_G0032059	Rasl2-9	77	32.544
MGP_NZOHlLtJ_G0019596	Rab5c	94	41.379	MGP_NZOHlLtJ_G0035708	Rab6b	98	41.379
MGP_NZOHlLtJ_G0019596	Rab5c	89	41.089	MGP_NZOHlLtJ_G0027878	Rab25	93	41.089
MGP_NZOHlLtJ_G0019596	Rab5c	89	44.330	MGP_NZOHlLtJ_G0025154	Rab1b	96	44.330
MGP_NZOHlLtJ_G0019596	Rab5c	98	40.845	MGP_NZOHlLtJ_G0019802	Rab37	95	40.845
MGP_NZOHlLtJ_G0019596	Rab5c	71	35.948	MGP_NZOHlLtJ_G0022666	Rabl2	67	35.948
MGP_NZOHlLtJ_G0019596	Rab5c	89	35.784	MGP_NZOHlLtJ_G0020291	Rab15	95	35.784
MGP_NZOHlLtJ_G0019596	Rab5c	81	31.250	MGP_NZOHlLtJ_G0029820	Rheb	93	31.250
MGP_NZOHlLtJ_G0019596	Rab5c	83	30.000	MGP_NZOHlLtJ_G0028159	Nras	99	33.333
MGP_NZOHlLtJ_G0019596	Rab5c	55	31.707	MGP_NZOHlLtJ_G0016957	Arl8a	62	31.707
MGP_NZOHlLtJ_G0019596	Rab5c	75	45.062	MGP_NZOHlLtJ_G0024584	Rab18	78	45.062
MGP_NZOHlLtJ_G0019596	Rab5c	78	42.012	MGP_NZOHlLtJ_G0033019	Rab30	83	42.012
MGP_NZOHlLtJ_G0019596	Rab5c	55	31.967	MGP_NZOHlLtJ_G0031568	Arl8b	62	31.967
MGP_NZOHlLtJ_G0019596	Rab5c	89	35.859	MGP_NZOHlLtJ_G0036637	Rab9b	97	35.859
MGP_NZOHlLtJ_G0019596	Rab5c	81	35.227	MGP_NZOHlLtJ_G0016340	Rab23	74	35.227
MGP_NZOHlLtJ_G0019596	Rab5c	81	44.000	MGP_NZOHlLtJ_G0033079	Rab6a	84	44.000
MGP_NZOHlLtJ_G0019596	Rab5c	89	36.318	MGP_NZOHlLtJ_G0036210	Rab33a	85	36.318
MGP_NZOHlLtJ_G0019596	Rab5c	89	40.206	MGP_NZOHlLtJ_G0021721	Rab2b	90	40.206
MGP_NZOHlLtJ_G0019596	Rab5c	89	37.113	MGP_NZOHlLtJ_G0030446	Rab35	96	37.436
MGP_NZOHlLtJ_G0019596	Rab5c	89	43.590	MGP_NZOHlLtJ_G0018498	Rab1a	95	43.590
MGP_NZOHlLtJ_G0019596	Rab5c	100	87.500	MGP_NZOHlLtJ_G0024338	Rab5a	100	87.500
MGP_NZOHlLtJ_G0019596	Rab5c	73	31.875	MGP_NZOHlLtJ_G0019199	Rab34	62	31.875
MGP_NZOHlLtJ_G0019596	Rab5c	91	46.939	MGP_NZOHlLtJ_G0024428	Rab31	98	46.939