EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0021825 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|AI327109|AI449052|PSP1|Psp1
Full Name: paraspeckle protein 1
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 61432 bases
Position: chr14:50744254-50805685
Accession: 1913895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0040151	RRM_1	PF00076.22	3.5e-32	1	2
MGP_NZOHlLtJ_P0040151	RRM_1	PF00076.22	3.5e-32	2	2
MGP_NZOHlLtJ_P0040150	RRM_1	PF00076.22	5e-32	1	2
MGP_NZOHlLtJ_P0040150	RRM_1	PF00076.22	5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0040150	-	2383	-	MGP_NZOHlLtJ_P0040150	523 (aa)	-	Q8R326
MGP_NZOHlLtJ_T0040151	-	2858	-	MGP_NZOHlLtJ_P0040151	466 (aa)	-	-
MGP_NZOHlLtJ_T0040152	-	529	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0040153	-	601	-	MGP_NZOHlLtJ_P0040153	58 (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0021825's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0021825's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0021825	Pspc1	84	71.429	MGP_NZOHlLtJ_G0029252	Sfpq	55	66.062
MGP_NZOHlLtJ_G0021825	Pspc1	95	35.484	MGP_NZOHlLtJ_G0025133	Rbm4b	72	33.036
MGP_NZOHlLtJ_G0021825	Pspc1	84	67.347	MGP_NZOHlLtJ_G0036485	Nono	93	59.836
MGP_NZOHlLtJ_G0021825	Pspc1	69	41.304	MGP_NZOHlLtJ_G0017921	Cirbp	68	34.247