EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0022226 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 13284 bases
Position: chr15:34765854-34779137
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0041284	PABP	PF00658.18	8.8e-33	1	1
MGP_NZOHlLtJ_P0041283	PABP	PF00658.18	7.5e-32	1	1
MGP_NZOHlLtJ_P0041283	RRM_5	PF13893.6	2.4e-08	1	2
MGP_NZOHlLtJ_P0041283	RRM_5	PF13893.6	2.4e-08	2	2
MGP_NZOHlLtJ_P0041283	RRM_1	PF00076.22	1.5e-90	1	4
MGP_NZOHlLtJ_P0041283	RRM_1	PF00076.22	1.5e-90	2	4
MGP_NZOHlLtJ_P0041283	RRM_1	PF00076.22	1.5e-90	3	4
MGP_NZOHlLtJ_P0041283	RRM_1	PF00076.22	1.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0041289	-	2887	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0041288	-	747	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0041287	-	866	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0041286	-	632	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0041285	-	725	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0041284	-	593	-	MGP_NZOHlLtJ_P0041284	117 (aa)	-	-
MGP_NZOHlLtJ_T0041283	-	2817	XM_011245339	MGP_NZOHlLtJ_P0041283	636 (aa)	XP_011243641	P29341

Gene Model

Click here to download MGP_NZOHlLtJ_G0022226's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0022226's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0022226	Pabpc1	100	80.346	MGP_NZOHlLtJ_G0024827	Pabpc2	100	80.346
MGP_NZOHlLtJ_G0022226	Pabpc1	58	36.145	MGP_NZOHlLtJ_G0034984	Elavl3	92	36.145
MGP_NZOHlLtJ_G0022226	Pabpc1	74	77.311	MGP_NZOHlLtJ_G0028534	-	93	77.311
MGP_NZOHlLtJ_G0022226	Pabpc1	51	34.884	MGP_NZOHlLtJ_G0025805	Celf2	57	35.714
MGP_NZOHlLtJ_G0022226	Pabpc1	98	78.165	MGP_NZOHlLtJ_G0029200	Pabpc4	100	93.452
MGP_NZOHlLtJ_G0022226	Pabpc1	98	61.635	MGP_NZOHlLtJ_G0027313	Pabpc1l	99	61.478
MGP_NZOHlLtJ_G0022226	Pabpc1	99	80.186	MGP_NZOHlLtJ_G0023576	Pabpc6	99	80.341
MGP_NZOHlLtJ_G0022226	Pabpc1	52	39.759	MGP_NZOHlLtJ_G0017995	Celf5	71	39.759
MGP_NZOHlLtJ_G0022226	Pabpc1	58	36.145	MGP_NZOHlLtJ_G0029034	Elavl4	88	36.145
MGP_NZOHlLtJ_G0022226	Pabpc1	56	34.783	MGP_NZOHlLtJ_G0033595	Tial1	94	31.008
MGP_NZOHlLtJ_G0022226	Pabpc1	58	34.667	MGP_NZOHlLtJ_G0030471	Rbm19	62	34.667
MGP_NZOHlLtJ_G0022226	Pabpc1	57	38.095	MGP_NZOHlLtJ_G0031438	Tia1	87	38.095
MGP_NZOHlLtJ_G0022226	Pabpc1	58	64.607	MGP_NZOHlLtJ_G0036568	Pabpc5	95	64.463
MGP_NZOHlLtJ_G0022226	Pabpc1	59	67.493	MGP_NZOHlLtJ_G0027667	Pabpc4l	97	69.277
MGP_NZOHlLtJ_G0022226	Pabpc1	58	37.349	MGP_NZOHlLtJ_G0028903	Elavl2	89	37.349
MGP_NZOHlLtJ_G0022226	Pabpc1	57	32.450	MGP_NZOHlLtJ_G0033843	Elavl1	95	32.450