EuRBPDB

Description

Ensembl ID: MGP_NZOHlLtJ_G0024054 (Gene tree)
Gene ID: -
Gene Symbol: Lsm2
Alias: D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|Sm-X5GN|SmX5|snRNP
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 4031 bases
Position: chr17:34646788-34650818
Accession: 90676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0047787	LSM	PF01423.22	1.1e-16	1	1
MGP_NZOHlLtJ_P0047790	LSM	PF01423.22	2.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0047786	-	1586	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0047787	-	841	-	MGP_NZOHlLtJ_P0047787	95 (aa)	-	-
MGP_NZOHlLtJ_T0047796	-	1067	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0047795	-	528	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0047794	-	691	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0047793	-	871	-	MGP_NZOHlLtJ_P0047793	85 (aa)	-	-
MGP_NZOHlLtJ_T0047792	-	654	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0047791	-	688	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0047790	-	874	-	MGP_NZOHlLtJ_P0047790	131 (aa)	-	-
MGP_NZOHlLtJ_T0047788	-	522	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0047789	-	368	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0024054	Lsm2	92	34.831	MGP_NZOHlLtJ_G0034232	Lsm4	70	35.644
MGP_NZOHlLtJ_G0024054	Lsm2	77	31.507	MGP_NZOHlLtJ_G0029232	Lsm10	75	31.507