EuRBPDB

Description

Ensembl ID: MGP_NZOHlLtJ_G0024083 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 11757 bases
Position: chr17:34922302-34934058
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0047921	ResIII	PF04851.15	1.6e-07	1	1
MGP_NZOHlLtJ_P0047922	ResIII	PF04851.15	2.3e-07	1	1
MGP_NZOHlLtJ_P0047924	ResIII	PF04851.15	2.3e-07	1	1
MGP_NZOHlLtJ_P0047926	ResIII	PF04851.15	2.3e-07	1	1
MGP_NZOHlLtJ_P0047921	DEAD	PF00270.29	8.1e-39	1	1
MGP_NZOHlLtJ_P0047922	DEAD	PF00270.29	1.2e-38	1	1
MGP_NZOHlLtJ_P0047924	DEAD	PF00270.29	1.2e-38	1	1
MGP_NZOHlLtJ_P0047926	DEAD	PF00270.29	1.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0047924	-	2845	-	MGP_NZOHlLtJ_P0047924	428 (aa)	-	-
MGP_NZOHlLtJ_T0047925	-	740	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0047926	-	1766	-	MGP_NZOHlLtJ_P0047926	428 (aa)	-	-
MGP_NZOHlLtJ_T0047921	-	1211	-	MGP_NZOHlLtJ_P0047921	324 (aa)	-	Q9Z1N5
MGP_NZOHlLtJ_T0047922	-	1735	-	MGP_NZOHlLtJ_P0047922	428 (aa)	-	-
MGP_NZOHlLtJ_T0047923	-	1710	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0024083	Ddx39b	67	38.062	MGP_NZOHlLtJ_G0031638	Gm5580	83	38.062
MGP_NZOHlLtJ_G0024083	Ddx39b	61	34.518	MGP_NZOHlLtJ_G0031637	Gm8994	68	34.634
MGP_NZOHlLtJ_G0024083	Ddx39b	85	38.356	MGP_NZOHlLtJ_G0019909	Eif4a3	88	38.356
MGP_NZOHlLtJ_G0024083	Ddx39b	86	40.833	MGP_NZOHlLtJ_G0023106	-	90	38.919
MGP_NZOHlLtJ_G0024083	Ddx39b	63	30.804	MGP_NZOHlLtJ_G0017358	D1Pas1	57	30.105
MGP_NZOHlLtJ_G0024083	Ddx39b	88	34.301	MGP_NZOHlLtJ_G0031887	Ddx47	90	32.190
MGP_NZOHlLtJ_G0024083	Ddx39b	86	32.891	MGP_NZOHlLtJ_G0034213	Ddx49	97	33.046
MGP_NZOHlLtJ_G0024083	Ddx39b	84	32.970	MGP_NZOHlLtJ_G0027386	Ddx27	54	31.655
MGP_NZOHlLtJ_G0024083	Ddx39b	63	30.804	MGP_NZOHlLtJ_G0036083	Ddx3x	56	30.105
MGP_NZOHlLtJ_G0024083	Ddx39b	89	37.076	MGP_NZOHlLtJ_G0018979	Eif4a1	79	37.076
MGP_NZOHlLtJ_G0024083	Ddx39b	91	31.884	MGP_NZOHlLtJ_G0034644	Ddx19a	83	31.884
MGP_NZOHlLtJ_G0024083	Ddx39b	91	33.083	MGP_NZOHlLtJ_G0034645	Ddx19b	82	33.083
MGP_NZOHlLtJ_G0024083	Ddx39b	77	30.029	MGP_NZOHlLtJ_G0019742	Ddx5	65	30.029
MGP_NZOHlLtJ_G0024083	Ddx39b	100	90.888	MGP_NZOHlLtJ_G0034352	Ddx39	100	90.888
MGP_NZOHlLtJ_G0024083	Ddx39b	84	31.903	MGP_NZOHlLtJ_G0035046	Ddx25	82	32.020