EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0024827 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:37870935-37873520
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0050098	PABP	PF00658.18	1.8e-21	1	1
MGP_NZOHlLtJ_P0050098	RRM_5	PF13893.6	8.5e-10	1	2
MGP_NZOHlLtJ_P0050098	RRM_5	PF13893.6	8.5e-10	2	2
MGP_NZOHlLtJ_P0050098	RRM_1	PF00076.22	2.1e-86	1	4
MGP_NZOHlLtJ_P0050098	RRM_1	PF00076.22	2.1e-86	2	4
MGP_NZOHlLtJ_P0050098	RRM_1	PF00076.22	2.1e-86	3	4
MGP_NZOHlLtJ_P0050098	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0050098	-	2586	-	MGP_NZOHlLtJ_P0050098	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_NZOHlLtJ_G0024827's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0024827's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0024827	Pabpc2	61	64.167	MGP_NZOHlLtJ_G0027667	Pabpc4l	95	68.098
MGP_NZOHlLtJ_G0024827	Pabpc2	98	56.938	MGP_NZOHlLtJ_G0027313	Pabpc1l	99	56.938
MGP_NZOHlLtJ_G0024827	Pabpc2	50	35.036	MGP_NZOHlLtJ_G0033595	Tial1	92	32.500
MGP_NZOHlLtJ_G0024827	Pabpc2	59	34.940	MGP_NZOHlLtJ_G0029034	Elavl4	88	34.940
MGP_NZOHlLtJ_G0024827	Pabpc2	100	80.346	MGP_NZOHlLtJ_G0022226	Pabpc1	100	80.346
MGP_NZOHlLtJ_G0024827	Pabpc2	61	34.940	MGP_NZOHlLtJ_G0034984	Elavl3	90	34.940
MGP_NZOHlLtJ_G0024827	Pabpc2	63	38.554	MGP_NZOHlLtJ_G0017995	Celf5	98	38.554
MGP_NZOHlLtJ_G0024827	Pabpc2	76	68.712	MGP_NZOHlLtJ_G0028534	-	96	68.712
MGP_NZOHlLtJ_G0024827	Pabpc2	62	60.955	MGP_NZOHlLtJ_G0036568	Pabpc5	96	61.111
MGP_NZOHlLtJ_G0024827	Pabpc2	59	36.145	MGP_NZOHlLtJ_G0028903	Elavl2	89	36.145
MGP_NZOHlLtJ_G0024827	Pabpc2	99	69.876	MGP_NZOHlLtJ_G0023576	Pabpc6	99	70.186
MGP_NZOHlLtJ_G0024827	Pabpc2	99	67.405	MGP_NZOHlLtJ_G0029200	Pabpc4	100	85.714
MGP_NZOHlLtJ_G0024827	Pabpc2	57	35.443	MGP_NZOHlLtJ_G0031438	Tia1	95	33.835
MGP_NZOHlLtJ_G0024827	Pabpc2	59	34.667	MGP_NZOHlLtJ_G0030471	Rbm19	70	34.667