EuRBPDB

Description

Ensembl ID: MGP_NZOHlLtJ_G0025509 (Gene tree)
Gene ID: -
Gene Symbol: A1cf
Alias: 1810073H04Rik|ACF|ACF64|ACF65|ASP|Acf|Asp|MCM|MerCreMer|Tg(Myh6-cre/Esr1)1Jmk|Tg(Myh6-cre/Esr1*)1Jmk|alpha-MHC-MerCreMer|alphaMHC-Cre-Mer-Cre|apobec-1 complementation factor|mer
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 89069 bases
Position: chr19:30012212-30101280
Accession: 1917115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0052097	DND1_DSRM	PF14709.7	1.9e-25	1	1
MGP_NZOHlLtJ_P0052097	RRM_1	PF00076.22	2.3e-39	1	3
MGP_NZOHlLtJ_P0052097	RRM_1	PF00076.22	2.3e-39	2	3
MGP_NZOHlLtJ_P0052097	RRM_1	PF00076.22	2.3e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0052096	-	6839	XM_006527331	MGP_NZOHlLtJ_P0052096	587 (aa)	XP_006527394	Q5YD48
MGP_NZOHlLtJ_T0052097	-	3830	-	MGP_NZOHlLtJ_P0052097	595 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0025509	A1cf	52	53.759	MGP_NZOHlLtJ_G0035622	Syncrip	58	52.308
MGP_NZOHlLtJ_G0025509	A1cf	75	57.816	MGP_NZOHlLtJ_G0030051	Rbm47	89	67.376
MGP_NZOHlLtJ_G0025509	A1cf	52	53.896	MGP_NZOHlLtJ_G0029427	Hnrnpr	54	57.823
MGP_NZOHlLtJ_G0025509	A1cf	96	70.064	MGP_NZOHlLtJ_G0027806	Rbm46	88	70.064