EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0027667 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 6024 bases
Position: chr3:44225779-44231802
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0061325	RRM_5	PF13893.6	1.6e-13	1	3
MGP_NZOHlLtJ_P0061325	RRM_5	PF13893.6	1.6e-13	2	3
MGP_NZOHlLtJ_P0061325	RRM_5	PF13893.6	1.6e-13	3	3
MGP_NZOHlLtJ_P0061326	RRM_5	PF13893.6	1.6e-13	1	3
MGP_NZOHlLtJ_P0061326	RRM_5	PF13893.6	1.6e-13	2	3
MGP_NZOHlLtJ_P0061326	RRM_5	PF13893.6	1.6e-13	3	3
MGP_NZOHlLtJ_P0061325	RRM_1	PF00076.22	4.7e-83	1	4
MGP_NZOHlLtJ_P0061325	RRM_1	PF00076.22	4.7e-83	2	4
MGP_NZOHlLtJ_P0061325	RRM_1	PF00076.22	4.7e-83	3	4
MGP_NZOHlLtJ_P0061325	RRM_1	PF00076.22	4.7e-83	4	4
MGP_NZOHlLtJ_P0061326	RRM_1	PF00076.22	4.7e-83	1	4
MGP_NZOHlLtJ_P0061326	RRM_1	PF00076.22	4.7e-83	2	4
MGP_NZOHlLtJ_P0061326	RRM_1	PF00076.22	4.7e-83	3	4
MGP_NZOHlLtJ_P0061326	RRM_1	PF00076.22	4.7e-83	4	4
MGP_NZOHlLtJ_P0061327	RRM_1	PF00076.22	1.8e-40	1	2
MGP_NZOHlLtJ_P0061327	RRM_1	PF00076.22	1.8e-40	2	2
MGP_NZOHlLtJ_P0061328	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0061328	-	467	-	MGP_NZOHlLtJ_P0061328	50 (aa)	-	-
MGP_NZOHlLtJ_T0061326	-	5219	-	MGP_NZOHlLtJ_P0061326	370 (aa)	-	-
MGP_NZOHlLtJ_T0061327	-	723	-	MGP_NZOHlLtJ_P0061327	172 (aa)	-	-
MGP_NZOHlLtJ_T0061325	-	5253	XM_006500774	MGP_NZOHlLtJ_P0061325	370 (aa)	XP_006500837	A0A0A6YWT2

Gene Model

Click here to download MGP_NZOHlLtJ_G0027667's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0027667's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0027667	Pabpc4l	65	31.492	MGP_NZOHlLtJ_G0026332	Hnrnpa3	52	31.492
MGP_NZOHlLtJ_G0027667	Pabpc4l	94	33.333	MGP_NZOHlLtJ_G0033595	Tial1	99	31.618
MGP_NZOHlLtJ_G0027667	Pabpc4l	99	66.396	MGP_NZOHlLtJ_G0028534	-	75	66.396
MGP_NZOHlLtJ_G0027667	Pabpc4l	94	30.464	MGP_NZOHlLtJ_G0033843	Elavl1	91	30.464
MGP_NZOHlLtJ_G0027667	Pabpc4l	96	34.940	MGP_NZOHlLtJ_G0028903	Elavl2	89	34.940
MGP_NZOHlLtJ_G0027667	Pabpc4l	96	30.065	MGP_NZOHlLtJ_G0029034	Elavl4	70	35.484
MGP_NZOHlLtJ_G0027667	Pabpc4l	95	60.736	MGP_NZOHlLtJ_G0027313	Pabpc1l	59	60.736
MGP_NZOHlLtJ_G0027667	Pabpc4l	89	31.875	MGP_NZOHlLtJ_G0029330	Trnau1ap	88	34.211
MGP_NZOHlLtJ_G0027667	Pabpc4l	65	34.211	MGP_NZOHlLtJ_G0026612	Celf1	57	37.879
MGP_NZOHlLtJ_G0027667	Pabpc4l	83	34.286	MGP_NZOHlLtJ_G0036057	Rbm3	90	35.385
MGP_NZOHlLtJ_G0027667	Pabpc4l	96	36.145	MGP_NZOHlLtJ_G0034984	Elavl3	90	36.145
MGP_NZOHlLtJ_G0027667	Pabpc4l	97	57.865	MGP_NZOHlLtJ_G0036568	Pabpc5	96	57.967
MGP_NZOHlLtJ_G0027667	Pabpc4l	99	69.041	MGP_NZOHlLtJ_G0029200	Pabpc4	97	70.000
MGP_NZOHlLtJ_G0027667	Pabpc4l	98	64.497	MGP_NZOHlLtJ_G0023576	Pabpc6	58	64.497
MGP_NZOHlLtJ_G0027667	Pabpc4l	97	69.277	MGP_NZOHlLtJ_G0022226	Pabpc1	59	67.493
MGP_NZOHlLtJ_G0027667	Pabpc4l	95	30.539	MGP_NZOHlLtJ_G0031438	Tia1	95	30.000
MGP_NZOHlLtJ_G0027667	Pabpc4l	95	68.098	MGP_NZOHlLtJ_G0024827	Pabpc2	61	64.167