EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0028096 (Gene tree)
Gene ID: -
Gene Symbol: Rbm8a
Alias: 2310057C03Rik|AA673428|Rbm8
Full Name: RNA binding motif protein 8a
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 3863 bases
Position: chr3:96238328-96242190
Accession: 1913129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0063226	RRM_1	PF00076.22	5.3e-18	1	1
MGP_NZOHlLtJ_P0063225	RRM_1	PF00076.22	5.6e-18	1	1
MGP_NZOHlLtJ_P0063227	RRM_1	PF00076.22	5.6e-18	1	1
MGP_NZOHlLtJ_P0063225	RRM_3	PF08777.11	3.8e-06	1	1
MGP_NZOHlLtJ_P0063227	RRM_3	PF08777.11	3.9e-06	1	1
MGP_NZOHlLtJ_P0063226	RRM_3	PF08777.11	8.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0063229	-	560	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0063228	-	464	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0063225	-	2611	-	MGP_NZOHlLtJ_P0063225	173 (aa)	-	Q9CWZ3
MGP_NZOHlLtJ_T0063227	-	525	-	MGP_NZOHlLtJ_P0063227	174 (aa)	-	-
MGP_NZOHlLtJ_T0063226	-	2760	-	MGP_NZOHlLtJ_P0063226	171 (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0028096's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0028096's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0028096	Rbm8a	57	31.313	MGP_NZOHlLtJ_G0036263	Rbmx	73	32.000
MGP_NZOHlLtJ_G0028096	Rbm8a	62	32.000	MGP_NZOHlLtJ_G0033843	Elavl1	74	32.000
MGP_NZOHlLtJ_G0028096	Rbm8a	58	32.353	MGP_NZOHlLtJ_G0028903	Elavl2	59	33.784
MGP_NZOHlLtJ_G0028096	Rbm8a	62	30.693	MGP_NZOHlLtJ_G0029034	Elavl4	54	33.784
MGP_NZOHlLtJ_G0028096	Rbm8a	100	97.701	MGP_NZOHlLtJ_G0017281	Rbm8a2	100	97.701
MGP_NZOHlLtJ_G0028096	Rbm8a	54	35.870	MGP_NZOHlLtJ_G0031438	Tia1	77	35.870