EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0028113 (Gene tree)
Gene ID: -
Gene Symbol: Chd1l
Alias: 4432404A22Rik|Alc1|Snf2p
Full Name: chromodomain helicase DNA binding protein 1-like
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 64767 bases
Position: chr3:97254455-97319221
Accession: 1915308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0063305	ResIII	PF04851.15	1.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0063306	-	2679	-	MGP_NZOHlLtJ_P0063306	892 (aa)	-	-
MGP_NZOHlLtJ_T0063307	-	501	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0063305	-	3008	XM_017319700	MGP_NZOHlLtJ_P0063305	900 (aa)	XP_017175189	Q9CXF7
MGP_NZOHlLtJ_T0063308	-	2941	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0028113's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0028113's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0028113	Chd1l	51	35.135	MGP_NZOHlLtJ_G0031291	Smarcad1	50	35.135
MGP_NZOHlLtJ_G0028113	Chd1l	64	42.568	MGP_NZOHlLtJ_G0034332	Smarca5	55	42.833
MGP_NZOHlLtJ_G0028113	Chd1l	62	43.826	MGP_NZOHlLtJ_G0036200	Smarca1	75	42.930
MGP_NZOHlLtJ_G0028113	Chd1l	54	39.054	MGP_NZOHlLtJ_G0025569	Hells	69	39.054
MGP_NZOHlLtJ_G0028113	Chd1l	50	32.657	MGP_NZOHlLtJ_G0021101	Ercc6l2	81	30.021
MGP_NZOHlLtJ_G0028113	Chd1l	50	30.724	MGP_NZOHlLtJ_G0028525	Rad54b	56	30.196