EuRBPDB

Description

Ensembl ID: MGP_NZOHlLtJ_G0028512 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 181512 bases
Position: chr4:5202648-5384159
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0065292	ResIII	PF04851.15	4.5e-06	1	1
MGP_NZOHlLtJ_P0065293	ResIII	PF04851.15	4.5e-06	1	1
MGP_NZOHlLtJ_P0065292	BRK	PF07533.16	4.8e-37	1	2
MGP_NZOHlLtJ_P0065292	BRK	PF07533.16	4.8e-37	2	2
MGP_NZOHlLtJ_P0065293	BRK	PF07533.16	4.8e-37	1	2
MGP_NZOHlLtJ_P0065293	BRK	PF07533.16	4.8e-37	2	2
MGP_NZOHlLtJ_P0065295	BRK	PF07533.16	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0065296	-	8958	-	MGP_NZOHlLtJ_P0065296	2985 (aa)	-	-
MGP_NZOHlLtJ_T0065297	-	741	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0065294	-	458	-	MGP_NZOHlLtJ_P0065294	19 (aa)	-	-
MGP_NZOHlLtJ_T0065295	-	3462	-	MGP_NZOHlLtJ_P0065295	941 (aa)	-	-
MGP_NZOHlLtJ_T0065292	-	9444	-	MGP_NZOHlLtJ_P0065292	2986 (aa)	-	-
MGP_NZOHlLtJ_T0065293	-	10321	-	MGP_NZOHlLtJ_P0065293	2986 (aa)	-	-
MGP_NZOHlLtJ_T0065290	-	4953	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0065291	-	2381	-	MGP_NZOHlLtJ_P0065291	631 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0028512	Chd7	94	54.334	MGP_NZOHlLtJ_G0034441	Chd9	83	69.649
MGP_NZOHlLtJ_G0028512	Chd7	72	64.905	MGP_NZOHlLtJ_G0027290	Chd6	84	72.837