EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0029200 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 46768 bases
Position: chr4:123439837-123486604
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0068288	PABP	PF00658.18	2.8e-31	1	1
MGP_NZOHlLtJ_P0068284	PABP	PF00658.18	3e-31	1	1
MGP_NZOHlLtJ_P0068285	PABP	PF00658.18	3.1e-31	1	1
MGP_NZOHlLtJ_P0068287	PABP	PF00658.18	3.3e-31	1	1
MGP_NZOHlLtJ_P0068288	RRM_5	PF13893.6	5.7e-09	1	2
MGP_NZOHlLtJ_P0068288	RRM_5	PF13893.6	5.7e-09	2	2
MGP_NZOHlLtJ_P0068284	RRM_5	PF13893.6	6.5e-09	1	2
MGP_NZOHlLtJ_P0068284	RRM_5	PF13893.6	6.5e-09	2	2
MGP_NZOHlLtJ_P0068285	RRM_5	PF13893.6	7.3e-09	1	2
MGP_NZOHlLtJ_P0068285	RRM_5	PF13893.6	7.3e-09	2	2
MGP_NZOHlLtJ_P0068287	RRM_5	PF13893.6	8.3e-09	1	1
MGP_NZOHlLtJ_P0068288	RRM_1	PF00076.22	4.3e-90	1	4
MGP_NZOHlLtJ_P0068288	RRM_1	PF00076.22	4.3e-90	2	4
MGP_NZOHlLtJ_P0068288	RRM_1	PF00076.22	4.3e-90	3	4
MGP_NZOHlLtJ_P0068288	RRM_1	PF00076.22	4.3e-90	4	4
MGP_NZOHlLtJ_P0068284	RRM_1	PF00076.22	5e-90	1	4
MGP_NZOHlLtJ_P0068284	RRM_1	PF00076.22	5e-90	2	4
MGP_NZOHlLtJ_P0068284	RRM_1	PF00076.22	5e-90	3	4
MGP_NZOHlLtJ_P0068284	RRM_1	PF00076.22	5e-90	4	4
MGP_NZOHlLtJ_P0068285	RRM_1	PF00076.22	5.6e-90	1	4
MGP_NZOHlLtJ_P0068285	RRM_1	PF00076.22	5.6e-90	2	4
MGP_NZOHlLtJ_P0068285	RRM_1	PF00076.22	5.6e-90	3	4
MGP_NZOHlLtJ_P0068285	RRM_1	PF00076.22	5.6e-90	4	4
MGP_NZOHlLtJ_P0068287	RRM_1	PF00076.22	6.3e-90	1	4
MGP_NZOHlLtJ_P0068287	RRM_1	PF00076.22	6.3e-90	2	4
MGP_NZOHlLtJ_P0068287	RRM_1	PF00076.22	6.3e-90	3	4
MGP_NZOHlLtJ_P0068287	RRM_1	PF00076.22	6.3e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0068290	-	692	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0068288	-	2700	-	MGP_NZOHlLtJ_P0068288	615 (aa)	-	-
MGP_NZOHlLtJ_T0068289	-	2181	-	MGP_NZOHlLtJ_P0068289	615 (aa)	-	-
MGP_NZOHlLtJ_T0068286	-	3166	-	MGP_NZOHlLtJ_P0068286	168 (aa)	-	-
MGP_NZOHlLtJ_T0068287	-	3019	-	MGP_NZOHlLtJ_P0068287	660 (aa)	-	-
MGP_NZOHlLtJ_T0068284	-	3111	-	MGP_NZOHlLtJ_P0068284	631 (aa)	-	-
MGP_NZOHlLtJ_T0068285	-	3050	-	MGP_NZOHlLtJ_P0068285	644 (aa)	-	-
MGP_NZOHlLtJ_T0068291	-	1146	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0068283	-	245	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0029200's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0029200's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0029200	Pabpc4	100	95.238	MGP_NZOHlLtJ_G0028534	-	98	93.400
MGP_NZOHlLtJ_G0029200	Pabpc4	100	85.714	MGP_NZOHlLtJ_G0024827	Pabpc2	99	67.405
MGP_NZOHlLtJ_G0029200	Pabpc4	95	69.481	MGP_NZOHlLtJ_G0036568	Pabpc5	95	65.289
MGP_NZOHlLtJ_G0029200	Pabpc4	93	35.366	MGP_NZOHlLtJ_G0033595	Tial1	94	30.233
MGP_NZOHlLtJ_G0029200	Pabpc4	93	31.579	MGP_NZOHlLtJ_G0028903	Elavl2	89	34.940
MGP_NZOHlLtJ_G0029200	Pabpc4	93	36.905	MGP_NZOHlLtJ_G0031438	Tia1	95	33.333
MGP_NZOHlLtJ_G0029200	Pabpc4	98	30.625	MGP_NZOHlLtJ_G0029034	Elavl4	90	30.625
MGP_NZOHlLtJ_G0029200	Pabpc4	52	31.818	MGP_NZOHlLtJ_G0023153	Ncbp2	56	31.818
MGP_NZOHlLtJ_G0029200	Pabpc4	55	32.278	MGP_NZOHlLtJ_G0021054	Hnrnpa0	50	33.113
MGP_NZOHlLtJ_G0029200	Pabpc4	93	32.258	MGP_NZOHlLtJ_G0026612	Celf1	70	38.636
MGP_NZOHlLtJ_G0029200	Pabpc4	52	32.184	MGP_NZOHlLtJ_G0017921	Cirbp	79	41.270
MGP_NZOHlLtJ_G0029200	Pabpc4	93	33.803	MGP_NZOHlLtJ_G0024664	Celf4	62	33.028
MGP_NZOHlLtJ_G0029200	Pabpc4	100	75.595	MGP_NZOHlLtJ_G0027313	Pabpc1l	99	61.201
MGP_NZOHlLtJ_G0029200	Pabpc4	100	93.452	MGP_NZOHlLtJ_G0022226	Pabpc1	98	78.165
MGP_NZOHlLtJ_G0029200	Pabpc4	97	70.000	MGP_NZOHlLtJ_G0027667	Pabpc4l	99	69.041
MGP_NZOHlLtJ_G0029200	Pabpc4	91	34.722	MGP_NZOHlLtJ_G0036263	Rbmx	80	34.722
MGP_NZOHlLtJ_G0029200	Pabpc4	56	31.034	MGP_NZOHlLtJ_G0034984	Elavl3	92	33.735
MGP_NZOHlLtJ_G0029200	Pabpc4	93	30.323	MGP_NZOHlLtJ_G0025805	Celf2	59	37.500
MGP_NZOHlLtJ_G0029200	Pabpc4	53	32.967	MGP_NZOHlLtJ_G0017995	Celf5	65	38.710
MGP_NZOHlLtJ_G0029200	Pabpc4	93	33.553	MGP_NZOHlLtJ_G0033843	Elavl1	95	34.513
MGP_NZOHlLtJ_G0029200	Pabpc4	93	32.394	MGP_NZOHlLtJ_G0028026	Celf3	69	33.784
MGP_NZOHlLtJ_G0029200	Pabpc4	100	84.524	MGP_NZOHlLtJ_G0023576	Pabpc6	99	68.125
MGP_NZOHlLtJ_G0029200	Pabpc4	93	35.211	MGP_NZOHlLtJ_G0035416	Celf6	68	37.113
MGP_NZOHlLtJ_G0029200	Pabpc4	86	37.500	MGP_NZOHlLtJ_G0036057	Rbm3	92	36.000