EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0029591 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 14750 bases
Position: chr4:150518185-150532934
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0069949	RRM_1	PF00076.22	1.2e-26	1	2
MGP_NZOHlLtJ_P0069949	RRM_1	PF00076.22	1.2e-26	2	2
MGP_NZOHlLtJ_P0069941	RRM_1	PF00076.22	4.4e-26	1	2
MGP_NZOHlLtJ_P0069941	RRM_1	PF00076.22	4.4e-26	2	2
MGP_NZOHlLtJ_P0069924	RRM_1	PF00076.22	4.5e-26	1	2
MGP_NZOHlLtJ_P0069924	RRM_1	PF00076.22	4.5e-26	2	2
MGP_NZOHlLtJ_P0069946	RRM_1	PF00076.22	4.5e-26	1	2
MGP_NZOHlLtJ_P0069946	RRM_1	PF00076.22	4.5e-26	2	2
MGP_NZOHlLtJ_P0069926	RRM_1	PF00076.22	4.8e-26	1	2
MGP_NZOHlLtJ_P0069926	RRM_1	PF00076.22	4.8e-26	2	2
MGP_NZOHlLtJ_P0069948	RRM_1	PF00076.22	4.8e-26	1	2
MGP_NZOHlLtJ_P0069948	RRM_1	PF00076.22	4.8e-26	2	2
MGP_NZOHlLtJ_P0069925	RRM_1	PF00076.22	5e-26	1	2
MGP_NZOHlLtJ_P0069925	RRM_1	PF00076.22	5e-26	2	2
MGP_NZOHlLtJ_P0069947	RRM_1	PF00076.22	5e-26	1	2
MGP_NZOHlLtJ_P0069947	RRM_1	PF00076.22	5e-26	2	2
MGP_NZOHlLtJ_P0069931	RRM_1	PF00076.22	1.2e-25	1	2
MGP_NZOHlLtJ_P0069931	RRM_1	PF00076.22	1.2e-25	2	2
MGP_NZOHlLtJ_P0069951	RRM_1	PF00076.22	4.1e-15	1	1
MGP_NZOHlLtJ_P0069952	RRM_1	PF00076.22	5e-11	1	1
MGP_NZOHlLtJ_P0069943	RRM_1	PF00076.22	6.6e-09	1	1
MGP_NZOHlLtJ_P0069945	RRM_1	PF00076.22	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0069928	-	731	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0069929	-	529	-	MGP_NZOHlLtJ_P0069929	98 (aa)	-	-
MGP_NZOHlLtJ_T0069924	-	6495	XM_011250237	MGP_NZOHlLtJ_P0069924	298 (aa)	XP_011248539	Q921F2
MGP_NZOHlLtJ_T0069925	-	6425	-	MGP_NZOHlLtJ_P0069925	302 (aa)	-	-
MGP_NZOHlLtJ_T0069926	-	6513	-	MGP_NZOHlLtJ_P0069926	304 (aa)	-	-
MGP_NZOHlLtJ_T0069927	-	1771	-	MGP_NZOHlLtJ_P0069927	298 (aa)	-	-
MGP_NZOHlLtJ_T0069948	-	1011	-	MGP_NZOHlLtJ_P0069948	304 (aa)	-	-
MGP_NZOHlLtJ_T0069949	-	709	-	MGP_NZOHlLtJ_P0069949	199 (aa)	-	-
MGP_NZOHlLtJ_T0069946	-	1096	-	MGP_NZOHlLtJ_P0069946	298 (aa)	-	-
MGP_NZOHlLtJ_T0069947	-	923	-	MGP_NZOHlLtJ_P0069947	302 (aa)	-	-
MGP_NZOHlLtJ_T0069944	-	814	-	MGP_NZOHlLtJ_P0069944	19 (aa)	-	-
MGP_NZOHlLtJ_T0069945	-	748	-	MGP_NZOHlLtJ_P0069945	84 (aa)	-	-
MGP_NZOHlLtJ_T0069942	-	1303	-	MGP_NZOHlLtJ_P0069942	285 (aa)	-	-
MGP_NZOHlLtJ_T0069943	-	570	-	MGP_NZOHlLtJ_P0069943	128 (aa)	-	-
MGP_NZOHlLtJ_T0069940	-	517	-	MGP_NZOHlLtJ_P0069940	77 (aa)	-	-
MGP_NZOHlLtJ_T0069941	-	1904	-	MGP_NZOHlLtJ_P0069941	295 (aa)	-	-
MGP_NZOHlLtJ_T0069939	-	683	-	MGP_NZOHlLtJ_P0069939	137 (aa)	-	-
MGP_NZOHlLtJ_T0069938	-	779	-	MGP_NZOHlLtJ_P0069938	140 (aa)	-	-
MGP_NZOHlLtJ_T0069937	-	739	-	MGP_NZOHlLtJ_P0069937	175 (aa)	-	-
MGP_NZOHlLtJ_T0069936	-	1009	-	MGP_NZOHlLtJ_P0069936	34 (aa)	-	-
MGP_NZOHlLtJ_T0069935	-	2004	-	MGP_NZOHlLtJ_P0069935	298 (aa)	-	-
MGP_NZOHlLtJ_T0069934	-	358	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0069933	-	627	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0069932	-	908	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0069931	-	6871	-	MGP_NZOHlLtJ_P0069931	414 (aa)	-	-
MGP_NZOHlLtJ_T0069930	-	676	-	MGP_NZOHlLtJ_P0069930	88 (aa)	-	-
MGP_NZOHlLtJ_T0069951	-	818	-	MGP_NZOHlLtJ_P0069951	243 (aa)	-	-
MGP_NZOHlLtJ_T0069950	-	1411	-	MGP_NZOHlLtJ_P0069950	84 (aa)	-	-
MGP_NZOHlLtJ_T0069953	-	370	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0069952	-	740	-	MGP_NZOHlLtJ_P0069952	149 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0029591's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0029591	Tardbp	72	38.806	MGP_NZOHlLtJ_G0033843	Elavl1	59	31.481
MGP_NZOHlLtJ_G0029591	Tardbp	79	31.818	MGP_NZOHlLtJ_G0019357	Msi2	100	35.398
MGP_NZOHlLtJ_G0029591	Tardbp	66	34.074	MGP_NZOHlLtJ_G0022862	Hnrnpa1	50	30.151
MGP_NZOHlLtJ_G0029591	Tardbp	79	34.021	MGP_NZOHlLtJ_G0030440	Msi1	62	34.021
MGP_NZOHlLtJ_G0029591	Tardbp	86	33.146	MGP_NZOHlLtJ_G0018702	Hnrnpab	82	32.099
MGP_NZOHlLtJ_G0029591	Tardbp	77	31.447	MGP_NZOHlLtJ_G0030246	Hnrnpdl	64	30.000
MGP_NZOHlLtJ_G0029591	Tardbp	77	38.194	MGP_NZOHlLtJ_G0030244	Hnrnpd	100	64.000
MGP_NZOHlLtJ_G0029591	Tardbp	94	30.282	MGP_NZOHlLtJ_G0031200	Hnrnpa2b1	66	30.348
MGP_NZOHlLtJ_G0029591	Tardbp	92	35.000	MGP_NZOHlLtJ_G0036263	Rbmx	78	35.000
MGP_NZOHlLtJ_G0029591	Tardbp	88	31.818	MGP_NZOHlLtJ_G0017927	Dazap1	89	35.065
MGP_NZOHlLtJ_G0029591	Tardbp	78	34.615	MGP_NZOHlLtJ_G0026332	Hnrnpa3	55	30.457