EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0030244 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 24044 bases
Position: chr5:100337897-100361940
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0073473	CBFNT	PF08143.11	1.2e-11	1	1
MGP_NZOHlLtJ_P0073471	CBFNT	PF08143.11	1.3e-11	1	1
MGP_NZOHlLtJ_P0073472	CBFNT	PF08143.11	1.6e-11	1	1
MGP_NZOHlLtJ_P0073470	CBFNT	PF08143.11	1.8e-11	1	1
MGP_NZOHlLtJ_P0073473	RRM_1	PF00076.22	7.4e-36	1	2
MGP_NZOHlLtJ_P0073473	RRM_1	PF00076.22	7.4e-36	2	2
MGP_NZOHlLtJ_P0073471	RRM_1	PF00076.22	9e-36	1	2
MGP_NZOHlLtJ_P0073471	RRM_1	PF00076.22	9e-36	2	2
MGP_NZOHlLtJ_P0073472	RRM_1	PF00076.22	1.2e-35	1	2
MGP_NZOHlLtJ_P0073472	RRM_1	PF00076.22	1.2e-35	2	2
MGP_NZOHlLtJ_P0073470	RRM_1	PF00076.22	1.4e-35	1	2
MGP_NZOHlLtJ_P0073470	RRM_1	PF00076.22	1.4e-35	2	2
MGP_NZOHlLtJ_P0073479	RRM_1	PF00076.22	2.3e-23	1	1
MGP_NZOHlLtJ_P0073480	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0073480	-	478	-	MGP_NZOHlLtJ_P0073480	25 (aa)	-	-
MGP_NZOHlLtJ_T0073479	-	493	-	MGP_NZOHlLtJ_P0073479	107 (aa)	-	-
MGP_NZOHlLtJ_T0073478	-	425	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0073475	-	737	-	MGP_NZOHlLtJ_P0073475	150 (aa)	-	-
MGP_NZOHlLtJ_T0073474	-	1117	-	MGP_NZOHlLtJ_P0073474	215 (aa)	-	-
MGP_NZOHlLtJ_T0073477	-	1104	-	MGP_NZOHlLtJ_P0073477	86 (aa)	-	-
MGP_NZOHlLtJ_T0073476	-	699	-	MGP_NZOHlLtJ_P0073476	131 (aa)	-	-
MGP_NZOHlLtJ_T0073471	-	2000	-	MGP_NZOHlLtJ_P0073471	306 (aa)	-	-
MGP_NZOHlLtJ_T0073470	-	6812	XM_006534735	MGP_NZOHlLtJ_P0073470	355 (aa)	XP_006534798	Q60668
MGP_NZOHlLtJ_T0073473	-	1537	-	MGP_NZOHlLtJ_P0073473	287 (aa)	-	-
MGP_NZOHlLtJ_T0073472	-	1670	-	MGP_NZOHlLtJ_P0073472	336 (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0030244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0030244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0030244	Hnrnpd	51	36.364	MGP_NZOHlLtJ_G0027432	Rbm38	51	36.364
MGP_NZOHlLtJ_G0030244	Hnrnpd	97	45.455	MGP_NZOHlLtJ_G0026332	Hnrnpa3	60	42.233
MGP_NZOHlLtJ_G0030244	Hnrnpd	100	37.838	MGP_NZOHlLtJ_G0021054	Hnrnpa0	86	34.173
MGP_NZOHlLtJ_G0030244	Hnrnpd	100	68.000	MGP_NZOHlLtJ_G0030440	Msi1	59	49.485
MGP_NZOHlLtJ_G0030244	Hnrnpd	100	88.000	MGP_NZOHlLtJ_G0018702	Hnrnpab	79	72.052
MGP_NZOHlLtJ_G0030244	Hnrnpd	100	80.000	MGP_NZOHlLtJ_G0030246	Hnrnpdl	89	65.278
MGP_NZOHlLtJ_G0030244	Hnrnpd	100	64.000	MGP_NZOHlLtJ_G0029591	Tardbp	77	38.194
MGP_NZOHlLtJ_G0030244	Hnrnpd	84	37.363	MGP_NZOHlLtJ_G0036263	Rbmx	83	43.750
MGP_NZOHlLtJ_G0030244	Hnrnpd	70	32.000	MGP_NZOHlLtJ_G0028903	Elavl2	58	31.169
MGP_NZOHlLtJ_G0030244	Hnrnpd	100	72.000	MGP_NZOHlLtJ_G0019357	Msi2	100	53.982
MGP_NZOHlLtJ_G0030244	Hnrnpd	70	34.667	MGP_NZOHlLtJ_G0036057	Rbm3	80	36.709
MGP_NZOHlLtJ_G0030244	Hnrnpd	69	35.294	MGP_NZOHlLtJ_G0016473	Boll	51	34.783
MGP_NZOHlLtJ_G0030244	Hnrnpd	67	46.154	MGP_NZOHlLtJ_G0017694	-	96	44.118
MGP_NZOHlLtJ_G0030244	Hnrnpd	57	31.884	MGP_NZOHlLtJ_G0030567	Snrnp35	51	35.484
MGP_NZOHlLtJ_G0030244	Hnrnpd	97	44.545	MGP_NZOHlLtJ_G0031200	Hnrnpa2b1	72	41.148
MGP_NZOHlLtJ_G0030244	Hnrnpd	84	36.559	MGP_NZOHlLtJ_G0017921	Cirbp	83	38.776
MGP_NZOHlLtJ_G0030244	Hnrnpd	100	56.000	MGP_NZOHlLtJ_G0017927	Dazap1	98	41.935
MGP_NZOHlLtJ_G0030244	Hnrnpd	55	35.593	MGP_NZOHlLtJ_G0031438	Tia1	69	32.308
MGP_NZOHlLtJ_G0030244	Hnrnpd	71	33.333	MGP_NZOHlLtJ_G0020409	Slirp	70	33.333