EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0030440 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 29148 bases
Position: chr5:116710937-116740084
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0074390	RRM_1	PF00076.22	6.9e-33	1	2
MGP_NZOHlLtJ_P0074390	RRM_1	PF00076.22	6.9e-33	2	2
MGP_NZOHlLtJ_P0074391	RRM_1	PF00076.22	1.6e-28	1	2
MGP_NZOHlLtJ_P0074391	RRM_1	PF00076.22	1.6e-28	2	2
MGP_NZOHlLtJ_P0074395	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0074391	-	807	-	MGP_NZOHlLtJ_P0074391	268 (aa)	-	-
MGP_NZOHlLtJ_T0074390	-	2988	-	MGP_NZOHlLtJ_P0074390	362 (aa)	-	-
MGP_NZOHlLtJ_T0074393	-	806	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0074392	-	367	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0074395	-	726	-	MGP_NZOHlLtJ_P0074395	196 (aa)	-	-
MGP_NZOHlLtJ_T0074394	-	581	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0074396	-	596	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0074389	-	2626	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0030440's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0030440's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0030440	Msi1	57	42.949	MGP_NZOHlLtJ_G0021054	Hnrnpa0	59	43.646
MGP_NZOHlLtJ_G0030440	Msi1	58	48.052	MGP_NZOHlLtJ_G0018702	Hnrnpab	79	40.800
MGP_NZOHlLtJ_G0030440	Msi1	56	41.379	MGP_NZOHlLtJ_G0033595	Tial1	69	31.469
MGP_NZOHlLtJ_G0030440	Msi1	61	43.750	MGP_NZOHlLtJ_G0031200	Hnrnpa2b1	91	41.379
MGP_NZOHlLtJ_G0030440	Msi1	62	34.021	MGP_NZOHlLtJ_G0029591	Tardbp	79	34.021
MGP_NZOHlLtJ_G0030440	Msi1	58	48.052	MGP_NZOHlLtJ_G0030246	Hnrnpdl	75	39.676
MGP_NZOHlLtJ_G0030440	Msi1	59	49.485	MGP_NZOHlLtJ_G0030244	Hnrnpd	100	68.000
MGP_NZOHlLtJ_G0030440	Msi1	88	42.308	MGP_NZOHlLtJ_G0017927	Dazap1	98	44.311
MGP_NZOHlLtJ_G0030440	Msi1	51	38.983	MGP_NZOHlLtJ_G0017921	Cirbp	87	40.351
MGP_NZOHlLtJ_G0030440	Msi1	59	40.000	MGP_NZOHlLtJ_G0026332	Hnrnpa3	70	37.879
MGP_NZOHlLtJ_G0030440	Msi1	99	75.665	MGP_NZOHlLtJ_G0019357	Msi2	100	90.323
MGP_NZOHlLtJ_G0030440	Msi1	61	51.064	MGP_NZOHlLtJ_G0027432	Rbm38	66	46.809