EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0031296 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 162782 bases
Position: chr6:64779001-64941782
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	1	9
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	2	9
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	3	9
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	4	9
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	5	9
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	6	9
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	7	9
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	8	9
MGP_NZOHlLtJ_P0078614	zf-C2H2	PF00096.26	5.7e-59	9	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	1	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	2	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	3	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	4	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	5	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	6	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	7	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	8	9
MGP_NZOHlLtJ_P0078609	zf-C2H2	PF00096.26	1e-58	9	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	1	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	2	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	3	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	4	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	5	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	6	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	7	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	8	9
MGP_NZOHlLtJ_P0078612	zf-C2H2	PF00096.26	1e-48	9	9
MGP_NZOHlLtJ_P0078611	zf-C2H2	PF00096.26	8.2e-27	1	5
MGP_NZOHlLtJ_P0078611	zf-C2H2	PF00096.26	8.2e-27	2	5
MGP_NZOHlLtJ_P0078611	zf-C2H2	PF00096.26	8.2e-27	3	5
MGP_NZOHlLtJ_P0078611	zf-C2H2	PF00096.26	8.2e-27	4	5
MGP_NZOHlLtJ_P0078611	zf-C2H2	PF00096.26	8.2e-27	5	5
MGP_NZOHlLtJ_P0078614	zf-met	PF12874.7	1.5e-20	1	3
MGP_NZOHlLtJ_P0078614	zf-met	PF12874.7	1.5e-20	2	3
MGP_NZOHlLtJ_P0078614	zf-met	PF12874.7	1.5e-20	3	3
MGP_NZOHlLtJ_P0078609	zf-met	PF12874.7	2.7e-20	1	3
MGP_NZOHlLtJ_P0078609	zf-met	PF12874.7	2.7e-20	2	3
MGP_NZOHlLtJ_P0078609	zf-met	PF12874.7	2.7e-20	3	3
MGP_NZOHlLtJ_P0078612	zf-met	PF12874.7	8.9e-17	1	3
MGP_NZOHlLtJ_P0078612	zf-met	PF12874.7	8.9e-17	2	3
MGP_NZOHlLtJ_P0078612	zf-met	PF12874.7	8.9e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0078614	-	1935	-	MGP_NZOHlLtJ_P0078614	579 (aa)	-	-
MGP_NZOHlLtJ_T0078615	-	1920	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0078609	-	2155	XM_006506600	MGP_NZOHlLtJ_P0078609	599 (aa)	XP_006506663	Q9CXE0
MGP_NZOHlLtJ_T0078610	-	1938	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0078611	-	984	-	MGP_NZOHlLtJ_P0078611	221 (aa)	-	-
MGP_NZOHlLtJ_T0078612	-	1488	-	MGP_NZOHlLtJ_P0078612	415 (aa)	-	-
MGP_NZOHlLtJ_T0078613	-	4168	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0031296's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0031296's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0031296	Prdm5	72	48.760	MGP_NZOHlLtJ_G0032611	Zfp715	66	39.333
MGP_NZOHlLtJ_G0031296	Prdm5	76	30.247	MGP_NZOHlLtJ_G0032333	Zfp574	85	30.051
MGP_NZOHlLtJ_G0031296	Prdm5	74	41.463	MGP_NZOHlLtJ_G0030308	Gfi1	99	45.133
MGP_NZOHlLtJ_G0031296	Prdm5	88	42.857	MGP_NZOHlLtJ_G0018784	Zfp672	89	35.331
MGP_NZOHlLtJ_G0031296	Prdm5	79	40.244	MGP_NZOHlLtJ_G0029971	Zbtb49	96	45.070
MGP_NZOHlLtJ_G0031296	Prdm5	74	37.838	MGP_NZOHlLtJ_G0033548	E430018J23Rik	71	37.838
MGP_NZOHlLtJ_G0031296	Prdm5	73	40.562	MGP_NZOHlLtJ_G0033545	Zfp768	53	43.307
MGP_NZOHlLtJ_G0031296	Prdm5	77	38.550	MGP_NZOHlLtJ_G0033547	-	61	38.550
MGP_NZOHlLtJ_G0031296	Prdm5	78	38.571	MGP_NZOHlLtJ_G0018688	Zfp454	68	38.571
MGP_NZOHlLtJ_G0031296	Prdm5	91	39.062	MGP_NZOHlLtJ_G0022440	Zfp251	88	39.062
MGP_NZOHlLtJ_G0031296	Prdm5	84	36.545	MGP_NZOHlLtJ_G0018832	Zfp867	94	36.545
MGP_NZOHlLtJ_G0031296	Prdm5	68	42.361	MGP_NZOHlLtJ_G0031165	Repin1	91	33.016
MGP_NZOHlLtJ_G0031296	Prdm5	82	40.076	MGP_NZOHlLtJ_G0034991	Zfp872	99	40.530
MGP_NZOHlLtJ_G0031296	Prdm5	87	49.194	MGP_NZOHlLtJ_G0032299	Zfp111	70	41.528
MGP_NZOHlLtJ_G0031296	Prdm5	75	34.545	MGP_NZOHlLtJ_G0027410	Zfp64	69	31.561
MGP_NZOHlLtJ_G0031296	Prdm5	83	38.014	MGP_NZOHlLtJ_G0021129	Zfp759	94	38.870
MGP_NZOHlLtJ_G0031296	Prdm5	84	43.277	MGP_NZOHlLtJ_G0021128	Rslcan18	71	39.200
MGP_NZOHlLtJ_G0031296	Prdm5	85	37.217	MGP_NZOHlLtJ_G0018696	Zfp354a	79	37.217
MGP_NZOHlLtJ_G0031296	Prdm5	77	47.826	MGP_NZOHlLtJ_G0020694	Zkscan4	56	47.826
MGP_NZOHlLtJ_G0031296	Prdm5	78	38.389	MGP_NZOHlLtJ_G0032405	Zfp974	88	39.355
MGP_NZOHlLtJ_G0031296	Prdm5	84	35.979	MGP_NZOHlLtJ_G0021145	Zfp748	92	39.735
MGP_NZOHlLtJ_G0031296	Prdm5	81	42.941	MGP_NZOHlLtJ_G0026939	Zfp661	65	42.941
MGP_NZOHlLtJ_G0031296	Prdm5	70	46.087	MGP_NZOHlLtJ_G0023686	Zfp820	77	39.456
MGP_NZOHlLtJ_G0031296	Prdm5	74	50.000	MGP_NZOHlLtJ_G0023687	Zfp947	62	40.199
MGP_NZOHlLtJ_G0031296	Prdm5	93	45.185	MGP_NZOHlLtJ_G0027372	Zfp334	67	40.000
MGP_NZOHlLtJ_G0031296	Prdm5	76	39.057	MGP_NZOHlLtJ_G0032591	-	56	39.057
MGP_NZOHlLtJ_G0031296	Prdm5	77	44.643	MGP_NZOHlLtJ_G0031645	Zfp637	82	44.643
MGP_NZOHlLtJ_G0031296	Prdm5	91	48.387	MGP_NZOHlLtJ_G0032468	Zfp420	95	41.722
MGP_NZOHlLtJ_G0031296	Prdm5	78	34.752	MGP_NZOHlLtJ_G0034497	Zfp319	88	34.602
MGP_NZOHlLtJ_G0031296	Prdm5	68	48.544	MGP_NZOHlLtJ_G0034738	Snai3	55	42.336
MGP_NZOHlLtJ_G0031296	Prdm5	93	44.134	MGP_NZOHlLtJ_G0032301	Zfp108	66	38.222
MGP_NZOHlLtJ_G0031296	Prdm5	74	48.913	MGP_NZOHlLtJ_G0032303	Zfp94	77	38.489
MGP_NZOHlLtJ_G0031296	Prdm5	68	47.826	MGP_NZOHlLtJ_G0032302	Zfp61	53	41.525
MGP_NZOHlLtJ_G0031296	Prdm5	70	48.315	MGP_NZOHlLtJ_G0023698	Zfp945	82	35.252
MGP_NZOHlLtJ_G0031296	Prdm5	69	47.857	MGP_NZOHlLtJ_G0032296	Zfp112	68	39.711
MGP_NZOHlLtJ_G0031296	Prdm5	85	43.878	MGP_NZOHlLtJ_G0025063	Zfp236	77	43.860
MGP_NZOHlLtJ_G0031296	Prdm5	74	40.104	MGP_NZOHlLtJ_G0032041	Zfp628	60	38.208
MGP_NZOHlLtJ_G0031296	Prdm5	84	32.735	MGP_NZOHlLtJ_G0032049	Zfp865	78	32.895
MGP_NZOHlLtJ_G0031296	Prdm5	90	42.609	MGP_NZOHlLtJ_G0034279	Zfp882	94	35.714
MGP_NZOHlLtJ_G0031296	Prdm5	96	39.683	MGP_NZOHlLtJ_G0023677	Zfp51	98	39.683
MGP_NZOHlLtJ_G0031296	Prdm5	95	43.220	MGP_NZOHlLtJ_G0023675	Zfp677	79	36.027
MGP_NZOHlLtJ_G0031296	Prdm5	67	50.847	MGP_NZOHlLtJ_G0034655	Zfp1	67	40.167
MGP_NZOHlLtJ_G0031296	Prdm5	90	35.235	MGP_NZOHlLtJ_G0023705	Zscan10	88	32.440