EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0031887 (Gene tree)
Gene ID: -
Gene Symbol: Ddx47
Alias: 4930588A18Rik|C77285
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 12154 bases
Position: chr6:137648979-137661132
Accession: 1915005
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0081370	ResIII	PF04851.15	3.5e-06	1	1
MGP_NZOHlLtJ_P0081362	ResIII	PF04851.15	4.8e-06	1	1
MGP_NZOHlLtJ_P0081370	DEAD	PF00270.29	2.9e-48	1	1
MGP_NZOHlLtJ_P0081362	DEAD	PF00270.29	4.6e-48	1	1
MGP_NZOHlLtJ_P0081369	DEAD	PF00270.29	7.1e-38	1	2
MGP_NZOHlLtJ_P0081369	DEAD	PF00270.29	7.1e-38	2	2
MGP_NZOHlLtJ_P0081364	DEAD	PF00270.29	1.1e-21	1	1
MGP_NZOHlLtJ_P0081367	DEAD	PF00270.29	5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0081364	-	607	-	MGP_NZOHlLtJ_P0081364	196 (aa)	-	-
MGP_NZOHlLtJ_T0081365	-	978	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0081366	-	4013	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0081367	-	551	-	MGP_NZOHlLtJ_P0081367	180 (aa)	-	-
MGP_NZOHlLtJ_T0081362	-	1764	-	MGP_NZOHlLtJ_P0081362	455 (aa)	-	Q9CWX9
MGP_NZOHlLtJ_T0081363	-	435	-	MGP_NZOHlLtJ_P0081363	138 (aa)	-	-
MGP_NZOHlLtJ_T0081368	-	620	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0081369	-	1139	-	MGP_NZOHlLtJ_P0081369	379 (aa)	-	-
MGP_NZOHlLtJ_T0081373	-	3271	-	MGP_NZOHlLtJ_P0081373	61 (aa)	-	-
MGP_NZOHlLtJ_T0081372	-	791	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0081371	-	693	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0081370	-	1078	-	MGP_NZOHlLtJ_P0081370	359 (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0031887's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0031887's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0031887	Ddx47	93	30.263	MGP_NZOHlLtJ_G0018979	Eif4a1	79	31.842
MGP_NZOHlLtJ_G0031887	Ddx47	91	34.218	MGP_NZOHlLtJ_G0035581	Ddx43	59	35.678
MGP_NZOHlLtJ_G0031887	Ddx47	86	33.690	MGP_NZOHlLtJ_G0017358	D1Pas1	57	34.759
MGP_NZOHlLtJ_G0031887	Ddx47	89	37.647	MGP_NZOHlLtJ_G0023106	-	94	32.376
MGP_NZOHlLtJ_G0031887	Ddx47	70	49.398	MGP_NZOHlLtJ_G0034586	Ddx28	72	33.079
MGP_NZOHlLtJ_G0031887	Ddx47	85	33.333	MGP_NZOHlLtJ_G0021029	Ddx41	58	35.556
MGP_NZOHlLtJ_G0031887	Ddx47	95	45.824	MGP_NZOHlLtJ_G0034213	Ddx49	97	49.271
MGP_NZOHlLtJ_G0031887	Ddx47	80	37.389	MGP_NZOHlLtJ_G0019742	Ddx5	71	37.457
MGP_NZOHlLtJ_G0031887	Ddx47	91	31.536	MGP_NZOHlLtJ_G0016981	Ddx59	60	33.333
MGP_NZOHlLtJ_G0031887	Ddx47	94	30.424	MGP_NZOHlLtJ_G0017737	Ddx50	61	30.918
MGP_NZOHlLtJ_G0031887	Ddx47	66	35.593	MGP_NZOHlLtJ_G0031638	Gm5580	70	31.120
MGP_NZOHlLtJ_G0031887	Ddx47	84	35.217	MGP_NZOHlLtJ_G0026009	Ddx31	61	31.529
MGP_NZOHlLtJ_G0031887	Ddx47	90	32.361	MGP_NZOHlLtJ_G0034352	Ddx39	89	33.155
MGP_NZOHlLtJ_G0031887	Ddx47	83	38.040	MGP_NZOHlLtJ_G0022501	Ddx17	57	37.374
MGP_NZOHlLtJ_G0031887	Ddx47	81	35.694	MGP_NZOHlLtJ_G0030570	Ddx55	57	35.694
MGP_NZOHlLtJ_G0031887	Ddx47	93	33.504	MGP_NZOHlLtJ_G0021360	Ddx4	56	34.015
MGP_NZOHlLtJ_G0031887	Ddx47	96	30.491	MGP_NZOHlLtJ_G0019909	Eif4a3	94	31.783
MGP_NZOHlLtJ_G0031887	Ddx47	86	46.875	MGP_NZOHlLtJ_G0020035	Ddx1	60	46.875
MGP_NZOHlLtJ_G0031887	Ddx47	83	31.728	MGP_NZOHlLtJ_G0019295	Ddx52	58	33.144
MGP_NZOHlLtJ_G0031887	Ddx47	86	38.889	MGP_NZOHlLtJ_G0018451	Ddx56	99	35.887
MGP_NZOHlLtJ_G0031887	Ddx47	86	33.690	MGP_NZOHlLtJ_G0036083	Ddx3x	56	34.492
MGP_NZOHlLtJ_G0031887	Ddx47	90	32.190	MGP_NZOHlLtJ_G0024083	Ddx39b	88	34.301
MGP_NZOHlLtJ_G0031887	Ddx47	88	37.978	MGP_NZOHlLtJ_G0016852	Ddx18	55	38.798