EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0032381 (Gene tree)
Gene ID: -
Gene Symbol: Snrpa
Alias: C430021M15Rik|Rnu1a-1|Rnu1a1|U1 snRNP|U1-A|U1A
Full Name: small nuclear ribonucleoprotein polypeptide A
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 9764 bases
Position: chr7:25397615-25407378
Accession: 1855690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0083227	RRM_5	PF13893.6	5.5e-07	1	2
MGP_NZOHlLtJ_P0083227	RRM_5	PF13893.6	5.5e-07	2	2
MGP_NZOHlLtJ_P0083228	RRM_5	PF13893.6	5.5e-07	1	2
MGP_NZOHlLtJ_P0083228	RRM_5	PF13893.6	5.5e-07	2	2
MGP_NZOHlLtJ_P0083229	RRM_5	PF13893.6	5.5e-07	1	2
MGP_NZOHlLtJ_P0083229	RRM_5	PF13893.6	5.5e-07	2	2
MGP_NZOHlLtJ_P0083227	RRM_1	PF00076.22	4.6e-28	1	2
MGP_NZOHlLtJ_P0083227	RRM_1	PF00076.22	4.6e-28	2	2
MGP_NZOHlLtJ_P0083228	RRM_1	PF00076.22	4.6e-28	1	2
MGP_NZOHlLtJ_P0083228	RRM_1	PF00076.22	4.6e-28	2	2
MGP_NZOHlLtJ_P0083229	RRM_1	PF00076.22	4.6e-28	1	2
MGP_NZOHlLtJ_P0083229	RRM_1	PF00076.22	4.6e-28	2	2
MGP_NZOHlLtJ_P0083230	RRM_1	PF00076.22	1.1e-18	1	2
MGP_NZOHlLtJ_P0083230	RRM_1	PF00076.22	1.1e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0083227	-	1292	-	MGP_NZOHlLtJ_P0083227	287 (aa)	-	-
MGP_NZOHlLtJ_T0083226	-	513	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0083229	-	1369	-	MGP_NZOHlLtJ_P0083229	287 (aa)	-	-
MGP_NZOHlLtJ_T0083228	-	1340	-	MGP_NZOHlLtJ_P0083228	287 (aa)	-	-
MGP_NZOHlLtJ_T0083230	-	968	-	MGP_NZOHlLtJ_P0083230	247 (aa)	-	-
MGP_NZOHlLtJ_T0083231	-	510	-	MGP_NZOHlLtJ_P0083231	44 (aa)	-	-
MGP_NZOHlLtJ_T0083232	-	1690	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0032381's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0032381's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0032381	Snrpa	98	89.712	MGP_NZOHlLtJ_G0023658	Gm5145	95	90.146
MGP_NZOHlLtJ_G0032381	Snrpa	97	55.235	MGP_NZOHlLtJ_G0027050	Snrpb2	99	63.121