EuRBPDB

Description

Ensembl ID: MGP_NZOHlLtJ_G0034332 (Gene tree)
Gene ID: -
Gene Symbol: Smarca5
Alias: 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 45389 bases
Position: chr8:80534955-80580343
Accession: 1935129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0090381	ResIII	PF04851.15	1.2e-10	1	1
MGP_NZOHlLtJ_P0090381	DEAD	PF00270.29	3.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0090381	-	6097	-	MGP_NZOHlLtJ_P0090381	1044 (aa)	-	Q91ZW3
MGP_NZOHlLtJ_T0090382	-	3292	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0090383	-	503	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0090384	-	334	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0090385	-	681	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0090386	-	722	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0034332	Smarca5	55	42.833	MGP_NZOHlLtJ_G0028113	Chd1l	64	42.568
MGP_NZOHlLtJ_G0034332	Smarca5	76	84.818	MGP_NZOHlLtJ_G0036200	Smarca1	90	83.983