EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0034352 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 13100 bases
Position: chr8:83622006-83635105
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0090439	ResIII	PF04851.15	3.1e-05	1	1
MGP_NZOHlLtJ_P0090442	ResIII	PF04851.15	3.1e-05	1	1
MGP_NZOHlLtJ_P0090443	ResIII	PF04851.15	3.1e-05	1	1
MGP_NZOHlLtJ_P0090439	DEAD	PF00270.29	4.1e-38	1	1
MGP_NZOHlLtJ_P0090442	DEAD	PF00270.29	4.1e-38	1	1
MGP_NZOHlLtJ_P0090443	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0090443	-	1794	-	MGP_NZOHlLtJ_P0090443	427 (aa)	-	-
MGP_NZOHlLtJ_T0090442	-	3836	-	MGP_NZOHlLtJ_P0090442	427 (aa)	-	-
MGP_NZOHlLtJ_T0090441	-	1551	-	MGP_NZOHlLtJ_P0090441	208 (aa)	-	-
MGP_NZOHlLtJ_T0090440	-	1927	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0090444	-	754	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0090439	-	1656	XM_006531332	MGP_NZOHlLtJ_P0090439	427 (aa)	XP_006531395	Q8VDW0

Gene Model

Click here to download MGP_NZOHlLtJ_G0034352's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0034352's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0034352	Ddx39	81	30.312	MGP_NZOHlLtJ_G0016852	Ddx18	51	30.769
MGP_NZOHlLtJ_G0034352	Ddx39	86	39.167	MGP_NZOHlLtJ_G0023106	-	90	38.108
MGP_NZOHlLtJ_G0034352	Ddx39	90	30.392	MGP_NZOHlLtJ_G0017358	D1Pas1	57	31.565
MGP_NZOHlLtJ_G0034352	Ddx39	89	33.155	MGP_NZOHlLtJ_G0031887	Ddx47	90	32.361
MGP_NZOHlLtJ_G0034352	Ddx39	87	33.156	MGP_NZOHlLtJ_G0034213	Ddx49	97	33.333
MGP_NZOHlLtJ_G0034352	Ddx39	89	35.958	MGP_NZOHlLtJ_G0018979	Eif4a1	77	36.533
MGP_NZOHlLtJ_G0034352	Ddx39	90	30.637	MGP_NZOHlLtJ_G0034644	Ddx19a	81	30.637
MGP_NZOHlLtJ_G0034352	Ddx39	90	30.392	MGP_NZOHlLtJ_G0036083	Ddx3x	56	31.565
MGP_NZOHlLtJ_G0034352	Ddx39	90	32.061	MGP_NZOHlLtJ_G0034645	Ddx19b	81	32.061
MGP_NZOHlLtJ_G0034352	Ddx39	85	31.183	MGP_NZOHlLtJ_G0035046	Ddx25	81	31.328
MGP_NZOHlLtJ_G0034352	Ddx39	74	34.969	MGP_NZOHlLtJ_G0018451	Ddx56	61	32.051
MGP_NZOHlLtJ_G0034352	Ddx39	90	34.074	MGP_NZOHlLtJ_G0028189	Ddx20	50	34.140
MGP_NZOHlLtJ_G0034352	Ddx39	76	41.509	MGP_NZOHlLtJ_G0031638	Gm5580	83	37.586
MGP_NZOHlLtJ_G0034352	Ddx39	76	35.849	MGP_NZOHlLtJ_G0031637	Gm8994	68	34.466
MGP_NZOHlLtJ_G0034352	Ddx39	86	37.197	MGP_NZOHlLtJ_G0019909	Eif4a3	89	37.197
MGP_NZOHlLtJ_G0034352	Ddx39	100	90.888	MGP_NZOHlLtJ_G0024083	Ddx39b	100	90.888