EuRBPDB

Description

Ensembl ID: MGP_NZOHlLtJ_G0035622 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 36032 bases
Position: chr9:88366042-88402073
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0094376	RRM_5	PF13893.6	2.5e-06	1	1
MGP_NZOHlLtJ_P0094380	RRM_5	PF13893.6	3.3e-06	1	1
MGP_NZOHlLtJ_P0094377	RRM_5	PF13893.6	4.8e-06	1	1
MGP_NZOHlLtJ_P0094374	RRM_5	PF13893.6	4.8e-06	1	1
MGP_NZOHlLtJ_P0094379	RRM_5	PF13893.6	6.2e-06	1	1
MGP_NZOHlLtJ_P0094381	RRM_5	PF13893.6	7.5e-06	1	1
MGP_NZOHlLtJ_P0094381	RRM_1	PF00076.22	2.9e-60	1	4
MGP_NZOHlLtJ_P0094381	RRM_1	PF00076.22	2.9e-60	2	4
MGP_NZOHlLtJ_P0094381	RRM_1	PF00076.22	2.9e-60	3	4
MGP_NZOHlLtJ_P0094381	RRM_1	PF00076.22	2.9e-60	4	4
MGP_NZOHlLtJ_P0094377	RRM_1	PF00076.22	3e-44	1	3
MGP_NZOHlLtJ_P0094377	RRM_1	PF00076.22	3e-44	2	3
MGP_NZOHlLtJ_P0094377	RRM_1	PF00076.22	3e-44	3	3
MGP_NZOHlLtJ_P0094374	RRM_1	PF00076.22	3e-44	1	3
MGP_NZOHlLtJ_P0094374	RRM_1	PF00076.22	3e-44	2	3
MGP_NZOHlLtJ_P0094374	RRM_1	PF00076.22	3e-44	3	3
MGP_NZOHlLtJ_P0094379	RRM_1	PF00076.22	4.7e-44	1	3
MGP_NZOHlLtJ_P0094379	RRM_1	PF00076.22	4.7e-44	2	3
MGP_NZOHlLtJ_P0094379	RRM_1	PF00076.22	4.7e-44	3	3
MGP_NZOHlLtJ_P0094376	RRM_1	PF00076.22	8.4e-43	1	3
MGP_NZOHlLtJ_P0094376	RRM_1	PF00076.22	8.4e-43	2	3
MGP_NZOHlLtJ_P0094376	RRM_1	PF00076.22	8.4e-43	3	3
MGP_NZOHlLtJ_P0094380	RRM_1	PF00076.22	1.3e-42	1	3
MGP_NZOHlLtJ_P0094380	RRM_1	PF00076.22	1.3e-42	2	3
MGP_NZOHlLtJ_P0094380	RRM_1	PF00076.22	1.3e-42	3	3
MGP_NZOHlLtJ_P0094375	RRM_1	PF00076.22	1.4e-31	1	2
MGP_NZOHlLtJ_P0094375	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0094384	-	2384	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0094385	-	473	-	MGP_NZOHlLtJ_P0094385	94 (aa)	-	-
MGP_NZOHlLtJ_T0094379	-	2955	-	MGP_NZOHlLtJ_P0094379	623 (aa)	-	-
MGP_NZOHlLtJ_T0094378	-	1925	-	MGP_NZOHlLtJ_P0094378	67 (aa)	-	-
MGP_NZOHlLtJ_T0094380	-	1767	-	MGP_NZOHlLtJ_P0094380	588 (aa)	-	-
MGP_NZOHlLtJ_T0094381	-	2584	-	MGP_NZOHlLtJ_P0094381	682 (aa)	-	-
MGP_NZOHlLtJ_T0094382	-	549	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0094383	-	766	-	MGP_NZOHlLtJ_P0094383	196 (aa)	-	-
MGP_NZOHlLtJ_T0094375	-	3175	-	MGP_NZOHlLtJ_P0094375	448 (aa)	-	-
MGP_NZOHlLtJ_T0094374	-	9460	XM_006511293	MGP_NZOHlLtJ_P0094374	562 (aa)	XP_006511356	Q7TMK9
MGP_NZOHlLtJ_T0094377	-	3404	-	MGP_NZOHlLtJ_P0094377	561 (aa)	-	-
MGP_NZOHlLtJ_T0094376	-	3286	-	MGP_NZOHlLtJ_P0094376	527 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0035622	Syncrip	75	57.522	MGP_NZOHlLtJ_G0030051	Rbm47	88	62.069
MGP_NZOHlLtJ_G0035622	Syncrip	58	52.308	MGP_NZOHlLtJ_G0025509	A1cf	52	53.759
MGP_NZOHlLtJ_G0035622	Syncrip	97	78.843	MGP_NZOHlLtJ_G0029427	Hnrnpr	99	86.538
MGP_NZOHlLtJ_G0035622	Syncrip	52	56.250	MGP_NZOHlLtJ_G0027806	Rbm46	63	56.250