EuRBPDB

Description

Ensembl ID: MGP_NZOHlLtJ_G0036200 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Minus strand
Length: 75969 bases
Position: chrX:42858467-42934435
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0096874	ResIII	PF04851.15	4.4e-12	1	1
MGP_NZOHlLtJ_P0096873	ResIII	PF04851.15	1.1e-11	1	1
MGP_NZOHlLtJ_P0096871	ResIII	PF04851.15	1.8e-11	1	1
MGP_NZOHlLtJ_P0096870	ResIII	PF04851.15	1.9e-11	1	1
MGP_NZOHlLtJ_P0096872	ResIII	PF04851.15	1.9e-11	1	1
MGP_NZOHlLtJ_P0096870	DEAD	PF00270.29	1.3e-06	1	1
MGP_NZOHlLtJ_P0096872	DEAD	PF00270.29	1.3e-06	1	1
MGP_NZOHlLtJ_P0096871	DEAD	PF00270.29	1.3e-06	1	1
MGP_NZOHlLtJ_P0096874	DEAD	PF00270.29	2.4e-06	1	1
MGP_NZOHlLtJ_P0096873	DEAD	PF00270.29	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0096874	-	1965	-	MGP_NZOHlLtJ_P0096874	381 (aa)	-	-
MGP_NZOHlLtJ_T0096875	-	360	-	MGP_NZOHlLtJ_P0096875	117 (aa)	-	-
MGP_NZOHlLtJ_T0096876	-	409	-	-	- (aa)	-	-
MGP_NZOHlLtJ_T0096870	-	4024	XM_006541563	MGP_NZOHlLtJ_P0096870	1046 (aa)	XP_006541626	Q6PGB8
MGP_NZOHlLtJ_T0096871	-	3991	-	MGP_NZOHlLtJ_P0096871	1062 (aa)	-	-
MGP_NZOHlLtJ_T0096872	-	4798	-	MGP_NZOHlLtJ_P0096872	1046 (aa)	-	-
MGP_NZOHlLtJ_T0096873	-	2304	-	MGP_NZOHlLtJ_P0096873	768 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0036200	Smarca1	75	42.930	MGP_NZOHlLtJ_G0028113	Chd1l	62	43.826
MGP_NZOHlLtJ_G0036200	Smarca1	90	83.983	MGP_NZOHlLtJ_G0034332	Smarca5	76	84.818
MGP_NZOHlLtJ_G0036200	Smarca1	72	45.247	MGP_NZOHlLtJ_G0025569	Hells	65	47.410
MGP_NZOHlLtJ_G0036200	Smarca1	71	30.490	MGP_NZOHlLtJ_G0021101	Ercc6l2	82	30.353
MGP_NZOHlLtJ_G0036200	Smarca1	68	31.661	MGP_NZOHlLtJ_G0028525	Rad54b	62	32.212