EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NZOHlLtJ_G0036568 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_nzohlltj
Status: putative
Strand: Plus strand
Length: 2762 bases
Position: chrX:116289052-116291813
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NZOHlLtJ_P0098183	RRM_5	PF13893.6	7.2e-12	1	2
MGP_NZOHlLtJ_P0098183	RRM_5	PF13893.6	7.2e-12	2	2
MGP_NZOHlLtJ_P0098184	RRM_5	PF13893.6	7.2e-12	1	2
MGP_NZOHlLtJ_P0098184	RRM_5	PF13893.6	7.2e-12	2	2
MGP_NZOHlLtJ_P0098183	RRM_1	PF00076.22	1.1e-77	1	4
MGP_NZOHlLtJ_P0098183	RRM_1	PF00076.22	1.1e-77	2	4
MGP_NZOHlLtJ_P0098183	RRM_1	PF00076.22	1.1e-77	3	4
MGP_NZOHlLtJ_P0098183	RRM_1	PF00076.22	1.1e-77	4	4
MGP_NZOHlLtJ_P0098184	RRM_1	PF00076.22	1.1e-77	1	4
MGP_NZOHlLtJ_P0098184	RRM_1	PF00076.22	1.1e-77	2	4
MGP_NZOHlLtJ_P0098184	RRM_1	PF00076.22	1.1e-77	3	4
MGP_NZOHlLtJ_P0098184	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NZOHlLtJ_T0098183	-	2226	-	MGP_NZOHlLtJ_P0098183	381 (aa)	-	Q8C7D3
MGP_NZOHlLtJ_T0098184	-	2035	-	MGP_NZOHlLtJ_P0098184	381 (aa)	-	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0036568's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NZOHlLtJ_G0036568's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NZOHlLtJ_G0036568	Pabpc5	70	35.955	MGP_NZOHlLtJ_G0017995	Celf5	66	34.426
MGP_NZOHlLtJ_G0036568	Pabpc5	63	34.483	MGP_NZOHlLtJ_G0035416	Celf6	51	34.483
MGP_NZOHlLtJ_G0036568	Pabpc5	95	61.580	MGP_NZOHlLtJ_G0028534	-	73	61.667
MGP_NZOHlLtJ_G0036568	Pabpc5	95	64.463	MGP_NZOHlLtJ_G0022226	Pabpc1	58	64.607
MGP_NZOHlLtJ_G0036568	Pabpc5	95	58.445	MGP_NZOHlLtJ_G0023576	Pabpc6	59	58.470
MGP_NZOHlLtJ_G0036568	Pabpc5	95	65.289	MGP_NZOHlLtJ_G0029200	Pabpc4	95	69.481
MGP_NZOHlLtJ_G0036568	Pabpc5	96	57.967	MGP_NZOHlLtJ_G0027667	Pabpc4l	97	57.865
MGP_NZOHlLtJ_G0036568	Pabpc5	96	56.944	MGP_NZOHlLtJ_G0027313	Pabpc1l	64	57.022
MGP_NZOHlLtJ_G0036568	Pabpc5	96	61.111	MGP_NZOHlLtJ_G0024827	Pabpc2	62	60.955
MGP_NZOHlLtJ_G0036568	Pabpc5	94	37.037	MGP_NZOHlLtJ_G0028903	Elavl2	89	37.037
MGP_NZOHlLtJ_G0036568	Pabpc5	93	33.333	MGP_NZOHlLtJ_G0031438	Tia1	84	34.247