EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0018235 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 24404 bases
Position: chr11:99740270-99764673
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0031647	MMR_HSR1	PF01926.23	0.00022	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0031647	-	1916	XM_006532586	MGP_PWKPhJ_P0031647	216 (aa)	XP_006532649	P35278
MGP_PWKPhJ_T0031650	-	442	-	MGP_PWKPhJ_P0031650	34 (aa)	-	-
MGP_PWKPhJ_T0031649	-	412	-	MGP_PWKPhJ_P0031649	83 (aa)	-	-
MGP_PWKPhJ_T0031648	-	1968	-	MGP_PWKPhJ_P0031648	234 (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0018235's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0018235's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0018235	Rab5c	89	40.206	MGP_PWKPhJ_G0020303	Rab2b	90	40.206
MGP_PWKPhJ_G0018235	Rab5c	89	44.330	MGP_PWKPhJ_G0023645	Rab1b	96	44.330
MGP_PWKPhJ_G0018235	Rab5c	75	48.447	MGP_PWKPhJ_G0022511	Rab11b	74	48.447
MGP_PWKPhJ_G0018235	Rab5c	90	38.974	MGP_PWKPhJ_G0026914	Rab2a	92	38.974
MGP_PWKPhJ_G0018235	Rab5c	81	31.250	MGP_PWKPhJ_G0028189	Rheb	93	31.250
MGP_PWKPhJ_G0018235	Rab5c	98	40.845	MGP_PWKPhJ_G0018439	Rab37	95	40.845
MGP_PWKPhJ_G0018235	Rab5c	75	40.361	MGP_PWKPhJ_G0034357	Rab33a	70	40.361
MGP_PWKPhJ_G0018235	Rab5c	75	45.062	MGP_PWKPhJ_G0023083	Rab18	78	45.062
MGP_PWKPhJ_G0018235	Rab5c	93	37.379	MGP_PWKPhJ_G0026098	Rab33b	89	37.379
MGP_PWKPhJ_G0018235	Rab5c	90	41.262	MGP_PWKPhJ_G0033651	Rab11a	88	49.630
MGP_PWKPhJ_G0018235	Rab5c	81	35.227	MGP_PWKPhJ_G0015037	Rab23	74	35.227
MGP_PWKPhJ_G0018235	Rab5c	55	31.707	MGP_PWKPhJ_G0015652	Arl8a	62	31.707
MGP_PWKPhJ_G0018235	Rab5c	81	33.702	MGP_PWKPhJ_G0031945	Hras	94	33.702
MGP_PWKPhJ_G0018235	Rab5c	89	43.590	MGP_PWKPhJ_G0017160	Rab1a	95	43.590
MGP_PWKPhJ_G0018235	Rab5c	94	41.379	MGP_PWKPhJ_G0033895	Rab6b	98	41.379
MGP_PWKPhJ_G0018235	Rab5c	70	43.312	MGP_PWKPhJ_G0029808	Rab7	90	49.296
MGP_PWKPhJ_G0018235	Rab5c	78	32.544	MGP_PWKPhJ_G0030381	Rasl2-9	77	32.544
MGP_PWKPhJ_G0018235	Rab5c	89	41.089	MGP_PWKPhJ_G0026295	Rab25	93	41.089
MGP_PWKPhJ_G0018235	Rab5c	75	36.585	MGP_PWKPhJ_G0034524	Rab39b	77	36.585
MGP_PWKPhJ_G0018235	Rab5c	90	47.423	MGP_PWKPhJ_G0025872	Rab22a	98	47.423
MGP_PWKPhJ_G0018235	Rab5c	100	87.500	MGP_PWKPhJ_G0022839	Rab5a	100	87.500
MGP_PWKPhJ_G0018235	Rab5c	71	35.948	MGP_PWKPhJ_G0021239	Rabl2	67	35.948
MGP_PWKPhJ_G0018235	Rab5c	89	34.848	MGP_PWKPhJ_G0034923	Rab9	91	34.848
MGP_PWKPhJ_G0018235	Rab5c	55	31.967	MGP_PWKPhJ_G0029905	Arl8b	62	31.967
MGP_PWKPhJ_G0018235	Rab5c	73	31.875	MGP_PWKPhJ_G0017846	Rab34	62	31.875
MGP_PWKPhJ_G0018235	Rab5c	73	35.625	MGP_PWKPhJ_G0016465	Rab36	60	35.625
MGP_PWKPhJ_G0018235	Rab5c	86	39.785	MGP_PWKPhJ_G0024594	Rab14	89	40.741
MGP_PWKPhJ_G0018235	Rab5c	89	35.784	MGP_PWKPhJ_G0018926	Rab15	95	35.784
MGP_PWKPhJ_G0018235	Rab5c	91	46.939	MGP_PWKPhJ_G0022930	Rab31	98	46.939
MGP_PWKPhJ_G0018235	Rab5c	86	38.806	MGP_PWKPhJ_G0022939	Rab12	90	36.000
MGP_PWKPhJ_G0018235	Rab5c	89	35.859	MGP_PWKPhJ_G0034766	Rab9b	97	35.859
MGP_PWKPhJ_G0018235	Rab5c	81	44.000	MGP_PWKPhJ_G0031319	Rab6a	84	44.000
MGP_PWKPhJ_G0018235	Rab5c	78	42.012	MGP_PWKPhJ_G0031259	Rab30	83	42.012
MGP_PWKPhJ_G0018235	Rab5c	78	32.544	MGP_PWKPhJ_G0030278	Kras	98	30.102