EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0020402 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|AI327109|AI449052|PSP1|Psp1
Full Name: paraspeckle protein 1
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 58163 bases
Position: chr14:46046864-46105026
Accession: 1913895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0038995	RRM_1	PF00076.22	3.6e-32	1	2
MGP_PWKPhJ_P0038995	RRM_1	PF00076.22	3.6e-32	2	2
MGP_PWKPhJ_P0038994	RRM_1	PF00076.22	5e-32	1	2
MGP_PWKPhJ_P0038994	RRM_1	PF00076.22	5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0038994	-	2383	-	MGP_PWKPhJ_P0038994	523 (aa)	-	Q8R326
MGP_PWKPhJ_T0038995	-	2863	-	MGP_PWKPhJ_P0038995	466 (aa)	-	-
MGP_PWKPhJ_T0038996	-	528	-	-	- (aa)	-	-
MGP_PWKPhJ_T0038997	-	601	-	MGP_PWKPhJ_P0038997	58 (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0020402's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0020402's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0020402	Pspc1	93	36.066	MGP_PWKPhJ_G0023625	Rbm4	59	33.654
MGP_PWKPhJ_G0020402	Pspc1	69	41.304	MGP_PWKPhJ_G0016597	Cirbp	68	34.247
MGP_PWKPhJ_G0020402	Pspc1	84	71.429	MGP_PWKPhJ_G0027640	Sfpq	55	65.891